View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853-Insertion-2 (Length: 819)
Name: NF2853-Insertion-2
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 701; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 8 - 819
Target Start/End: Original strand, 48517159 - 48517974
Alignment:
| Q |
8 |
gggaatacctgcaaaaactt-gacactcaagtcaataaaagagcaaagagtgagaggataaagaatggataaagtgtaccttataacgacgacaatgagt |
106 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48517159 |
gggaatacctgcaaaaactttgacactcaaatcaataaaagagcaaagagtgagaggataaagaatggataaagtgtaccttataacgacgacaatgagt |
48517258 |
T |
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| Q |
107 |
gccttta------taggtgtgtgggcatgaattcgccttccaaagtattgatgggaggctgttatgatcggtgcctatcaatgggtttgacggcgtcgga |
200 |
Q |
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| T |
48517259 |
gcctttaaatttataggtgtgtgggcatgaa---gccttccaaagtattgatgggaggctgttatgatcggtgcccatcaatgggtttgacggcgtcgga |
48517355 |
T |
|
| Q |
201 |
tcaagtaatctgatttaaaatgttattnnnnnnntatcaaacaataatttgatttgattttgaaatatgattttacatttaaaagtaaacaagaataaaa |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48517356 |
tcaagtaatctgatttaaaatgttattaaaaaaatatcaaacaataatttgatttgattttgaaatatgattttacatttaaaagtaaacaagaataaaa |
48517455 |
T |
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| Q |
301 |
gactaagatgaaaaataaatattctccttattcaaactttaaattcaaagcactacacataatgaataaccttataattccgctacctaagttgccataa |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48517456 |
gactaagatgaaaaataaatactctccttattcaaactttaaattcaaagcactacacataatgaataaccttataattccgctacctaagttgccataa |
48517555 |
T |
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| Q |
401 |
taactaaagtcaaagaaactatagcatacttagtatcaaattaattcaattgtattgaccttcacacacacaagctgtatataaatactaaattcaccat |
500 |
Q |
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| T |
48517556 |
taactaaagtcaaagaacatataacatacttagtatcaaattaattcaattgtattgaccttcacacacacaaactgtatataaatactacattcaccat |
48517655 |
T |
|
| Q |
501 |
gctccaccctgcagttttgcaaaacagtctttgtttatttgcctcttcccctccctaacattaatttgtcctaattagtaaagaagcttaacagctacaa |
600 |
Q |
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| T |
48517656 |
actccatcctgcagttttgcaaaacagtctttgtttatttgcctcttcccctccctaacattaatttgtcctaattagtaaagaagcttaacagctacaa |
48517755 |
T |
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| Q |
601 |
gactgtaaaagaaaatgaagggttactctcttatagtagcacttaatgaaatttctcttatcattttccttctcctggtctcgtactccatgaatgttca |
700 |
Q |
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| T |
48517756 |
gactgtataagaaaatgaagggttactctcttatagtagcacttaatgaaatttctcttatcatcttccttctcctggtctcgtactccatgaatgttca |
48517855 |
T |
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| Q |
701 |
aggcatgagacctctgaaagatcaatctcctccatcattcttaagttgaataatcaaccaggcttattctggaccaagtcgcagaggacgcggtcactga |
800 |
Q |
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| T |
48517856 |
aggcatgagacctctgaaagatcaatctcctccatcattcttaagtttaataatcaaccaggcttattctggaccaagtcgcagaggacgcggtcactga |
48517955 |
T |
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| Q |
801 |
gaattaagactttgaatta |
819 |
Q |
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| T |
48517956 |
gaattaagactttgaatta |
48517974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 560 - 710
Target Start/End: Original strand, 10258119 - 10258272
Alignment:
| Q |
560 |
attaatttgtcctaattagtaaagaagcttaacagctacaagactgtaaaagaaaatgaagggttactctcttatagtagcact---taatgaaatttct |
656 |
Q |
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||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||| |||||||| ||| ||| ||| ||| ||||||||||||| |
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| T |
10258119 |
attaatttgtcctaattaggaaagaatcttaacacctacaagactgtacaagaaaatgatgggttactgtctaataatagtactgtttaatgaaatttct |
10258218 |
T |
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| Q |
657 |
cttatcattttccttctcctggtctcgtactccatgaatgttcaaggcatgaga |
710 |
Q |
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| T |
10258219 |
cttatcattttcctcctcttgctctcttactccatgaatgttcaaggcatgaga |
10258272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 708 - 800
Target Start/End: Complemental strand, 207091 - 206999
Alignment:
| Q |
708 |
agacctctgaaagatcaatctcctccatcattcttaagttgaataatcaaccaggcttattctggaccaagtcgcagaggacgcggtcactga |
800 |
Q |
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|||||||| |||||||||||| |||| || || |||||| |||||||||||||||||||||||||||||| | || |||||| ||||||||| |
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| T |
207091 |
agacctctcaaagatcaatctgctccttccgtcataagtttaataatcaaccaggcttattctggaccaagccacaaaggacgtggtcactga |
206999 |
T |
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