View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853-Insertion-4 (Length: 697)
Name: NF2853-Insertion-4
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 697
Target Start/End: Complemental strand, 5692125 - 5691437
Alignment:
| Q |
8 |
agttatagttagatgacccacatacttaatattttaaggttttgagttaagacgtgatgtctaattctacatgtgttgctcaaaatcttatgtgatgatc |
107 |
Q |
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| T |
5692125 |
agttatagttagatgacccacatacttaatattttaaggttttgagttaagatgtgatgtctaattctacatgtgttgctcaaaattttacgtgatgatc |
5692026 |
T |
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| Q |
108 |
gtcagacctcctcataatccaactacgcgtgcataatttaacatggtttaattaaatatgtgttgctcaatatcttaaggttttgagttaagatgtggtg |
207 |
Q |
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| T |
5692025 |
ttcagacctcctcataattcaactacgcatgcataattaaacatggtttaattaaatacgtgttgctcaatatcttaaggttttgagttaagatgtggtg |
5691926 |
T |
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| Q |
208 |
tataatgaatacaaagtaatcgatacatcttaaaaaatatggggctagaatgagataaccatgttctagtaatacaaggagcaaacccatttacttatct |
307 |
Q |
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| T |
5691925 |
tctaatgaatacaaagtaatcgatacatcttaaaaaatatggggctagaatgagataaccatgttctagtaatacaaggagcaaacccatttacttatct |
5691826 |
T |
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| Q |
308 |
tcaaaaatacgacaccgtaaaatcgagtctagtaagtaagatttccacattgagatacaagaccatctaactcattaagaggagcattagaagtgacaag |
407 |
Q |
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| T |
5691825 |
taaaaaatacgacactgtaaaatcgagtctagtaagtaagattaccacattgagatacaagaccatctaactcattaagaggagcattggaagtgacaag |
5691726 |
T |
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| Q |
408 |
agctttagataatgatttgtaataagtttcaaacaaaacaacgcacattccgtttgatatggccactttgataacttttagcaagacaatggttttgact |
507 |
Q |
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| T |
5691725 |
agctttagataatgatttgtaataagtttcaaacaaaacaacgtacattccgtttgatatggccactttgataacttttagcaagacaatgattttgact |
5691626 |
T |
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| Q |
508 |
tctagaacgctgatagatgagtgaaaataatatgatttgctaaggcaaaacaaccctgagtatcaccaaaacacattccatacccaagatagaattattg |
607 |
Q |
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| T |
5691625 |
tctagaacgctgatagatgagtgaaaataatatgatttggtaaggaaaaatagccttgagtatcaccaaaacacattccatacccaagatagaattattg |
5691526 |
T |
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| Q |
608 |
ttgaaagaggctgcatgcacattccatttgatcatctattcatcgctaccggtggtttgatcctagtataaaagatgatttaagttgtgt |
697 |
Q |
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| T |
5691525 |
ttgaaagaggctgcatgcacattccatttgatcatctattcatctctaccggtggtttgatcctagtat-aaagatgatttaagttgtgt |
5691437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 48097407 - 48097455
Alignment:
| Q |
432 |
agtttcaaacaaaacaacgcacattccgtttgatatggccactttgata |
480 |
Q |
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| T |
48097407 |
agtttcaaacaaaacaacattcattcagtttgatatgaccactttgata |
48097455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 414 - 484
Target Start/End: Original strand, 2624701 - 2624771
Alignment:
| Q |
414 |
agataatgatttgtaataagtttcaaacaaaacaacgcacattccgtttgatatggccactttgataactt |
484 |
Q |
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| T |
2624701 |
agataatgttttgaaatcaatttcaaacaaaacaacatacattctgtttgatatggtcactttaataactt |
2624771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 433 - 485
Target Start/End: Complemental strand, 44657268 - 44657216
Alignment:
| Q |
433 |
gtttcaaacaaaacaacgcacattccgtttgatatggccactttgataacttt |
485 |
Q |
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| T |
44657268 |
gtttcaaacaatacagcgtgcattccgtttgatatgaccattttgataacttt |
44657216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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