View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853R-Insertion-1 (Length: 1010)

Name: NF2853R-Insertion-1
Description: NF2853R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853R-Insertion-1
NF2853R-Insertion-1
[»] chr5 (6 HSPs)
chr5 (483-998)||(33810200-33810716)
chr5 (483-998)||(33815118-33815634)
chr5 (23-75)||(24499293-24499345)
chr5 (383-448)||(19608772-19608837)
chr5 (383-414)||(844797-844828)
chr5 (384-427)||(24111585-24111628)
[»] chr8 (7 HSPs)
chr8 (9-475)||(38813691-38814150)
chr8 (22-157)||(39462243-39462375)
chr8 (384-475)||(42964754-42964845)
chr8 (393-472)||(14548223-14548302)
chr8 (384-427)||(32615853-32615896)
chr8 (391-475)||(32203079-32203164)
chr8 (403-448)||(34462035-34462080)
[»] chr7 (5 HSPs)
chr7 (483-998)||(4836747-4837263)
chr7 (383-427)||(7399850-7399894)
chr7 (390-438)||(34004822-34004870)
chr7 (332-423)||(28198010-28198102)
chr7 (392-421)||(7936038-7936067)
[»] chr3 (7 HSPs)
chr3 (491-962)||(54968451-54968921)
chr3 (483-664)||(4283592-4283774)
chr3 (383-423)||(31375522-31375562)
chr3 (383-427)||(31732124-31732168)
chr3 (391-457)||(23512796-23512862)
chr3 (394-427)||(31596257-31596290)
chr3 (390-443)||(42461358-42461411)
[»] scaffold0479 (1 HSPs)
scaffold0479 (491-962)||(1226-1696)
[»] chr4 (2 HSPs)
chr4 (616-816)||(25004585-25004785)
chr4 (390-443)||(39753938-39753991)
[»] chr6 (5 HSPs)
chr6 (855-961)||(22982381-22982486)
chr6 (855-961)||(23805922-23806027)
chr6 (390-459)||(30326659-30326728)
chr6 (384-443)||(342949-343008)
chr6 (383-414)||(2248742-2248773)
[»] chr1 (12 HSPs)
chr1 (383-452)||(41884954-41885023)
chr1 (384-452)||(2571040-2571108)
chr1 (383-448)||(31963041-31963106)
chr1 (383-475)||(42592732-42592825)
chr1 (383-427)||(44698048-44698092)
chr1 (393-423)||(52698454-52698484)
chr1 (383-452)||(1411673-1411742)
chr1 (390-443)||(9433795-9433848)
chr1 (384-449)||(14444355-14444420)
chr1 (383-448)||(27262793-27262858)
chr1 (384-421)||(34040742-34040779)
chr1 (384-437)||(52478378-52478431)
[»] chr2 (3 HSPs)
chr2 (383-431)||(1944753-1944801)
chr2 (383-423)||(11074552-11074592)
chr2 (383-452)||(8701037-8701106)


Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 483 - 998
Target Start/End: Original strand, 33810200 - 33810716
Alignment:
Q  483 aacacaacttcacaaagacgtcagcagaccattgtgtgtttgtgaagaactatgaaaatggagagtccatcatacttttattgtatgttgatgatatgct 582  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33810200 aacacaacttcacaaagacgtcaacagaccattgtgtgtttgtgaagaactatgaaaatggagagtccatcatacttttattgtatgttgatgatatgct 33810299  T
Q  583 tattgttggaaaagataaagcaaagatagctgctctcaagaaagcattgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttgga 682  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33810300 tattgttggaaaagataagacaaagatatctgctctcaagaaagcattgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttgga 33810399  T
Q  683 atgaagatcattagagatcgattaaaaagaatgttgtggatgtcacaagaagaatatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaac 782  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33810400 atgaagatcattagagatcgatcaaaaagaatgttgtggatgtcacaagaagaatatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaac 33810499  T
Q  783 ctgtgcatgttccattacctggtcatttgaaactcaataagacacaatgtcccgagaatgaccgagagaaagaagaaatgagcaaggtgccctattcttc 882  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||    
T  33810500 ctgtgcatgttccattacctggtcatttgaaactcagtaagacacaatgtcctgagaatgatcaagagaaagaagaaatgagcaaggtgccctattcttc 33810599  T
Q  883 agccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcgggttatgcagtaggagtcgtgagtagattcatatcaaatc--agaaaaga 980  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||   |||||||    
T  33810600 agccgtgggtagccttatgtacgccatggtctgcacgaggccagacatc-ggttatgctgtaggagtcgtgagtagattcctatcaaatccaggaaaaga 33810698  T
Q  981 acactggagtgctgtgaa 998  Q
    ||||||||||||||||||    
T  33810699 acactggagtgctgtgaa 33810716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 483 - 998
Target Start/End: Original strand, 33815118 - 33815634
Alignment:
Q  483 aacacaacttcacaaagacgtcagcagaccattgtgtgtttgtgaagaactatgaaaatggagagtccatcatacttttattgtatgttgatgatatgct 582  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815118 aacacaacttcacaaagacgtcaacagaccattgtgtgtttgtgaagaactatgaaaatggagagtccatcatacttttattgtatgttgatgatatgct 33815217  T
Q  583 tattgttggaaaagataaagcaaagatagctgctctcaagaaagcattgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttgga 682  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815218 tattgttggaaaagataagacaaagatatctgctctcaagaaagcattgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttgga 33815317  T
Q  683 atgaagatcattagagatcgattaaaaagaatgttgtggatgtcacaagaagaatatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaac 782  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815318 atgaagatcattagagatcgatcaaaaagaatgttgtggatgtcacaagaagaatatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaac 33815417  T
Q  783 ctgtgcatgttccattacctggtcatttgaaactcaataagacacaatgtcccgagaatgaccgagagaaagaagaaatgagcaaggtgccctattcttc 882  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||    
T  33815418 ctgtgcatgttccattacctggtcatttgaaactcagtaagacacaatgtcctgagaatgatcaagagaaagaagaaatgagcaaggtgccctattcttc 33815517  T
Q  883 agccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcgggttatgcagtaggagtcgtgagtagattcatatcaaatc--agaaaaga 980  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||   |||||||    
T  33815518 agccgtgggtagccttatgtacgccatggtctgcacgaggccagacatc-ggttatgctgtaggagtcgtgagtagattcctatcaaatccaggaaaaga 33815616  T
Q  981 acactggagtgctgtgaa 998  Q
    ||||||||||||||||||    
T  33815617 acactggagtgctgtgaa 33815634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 24499293 - 24499345
Alignment:
Q  23 tgagtttctccctcatctttttgcaaaaagccgctccacggttgtaaagtctc 75  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24499293 tgagtttctccctcatctttttgcaaaaagccgctccacggtagtaaagtctc 24499345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 383 - 448
Target Start/End: Complemental strand, 19608837 - 19608772
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactactta 448  Q
    ||||||||||||||||||||||||||| |||| | |||||||||| ||| | ||||||||| ||||    
T  19608837 ctttttaatgtttcaatgtgttgaatagacaaattccaagataaagtttcctttttgaacttctta 19608772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 414
Target Start/End: Original strand, 844797 - 844828
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaa 414  Q
    ||||||||||||||||||||||||||||||||    
T  844797 ctttttaatgtttcaatgtgttgaatacacaa 844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 24111585 - 24111628
Alignment:
Q  384 tttttaatgtttcaatgtgttgaatacacaattcccaagataaa 427  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||    
T  24111585 tttttaaagtttcaatgtgttaaatacacaattcctaagataaa 24111628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Complemental strand, 38814150 - 38813691
Alignment:
Q  9 ctatagtctattgctgagtttctccctcatctttttgcaaaaagccgctccacggttgtaaagtctctcgtcttgtgtaatggctgaagtgacagtagtc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  38814150 ctatagtctattgctgagtttctccctcatctttttgcaaaaagctgctccacggttgtaaagtctc--gtcttgtgtaatggctgaagtgacagtagtc 38814053  T
Q  109 acaatgaaccccgaatatcatttgaagatctcaaaattatcttccacttacagggataattcacaaaacacgattccacgaaacggagctttccctcatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  38814052 acaatgaaccccgaatatcatttgaagatctcaaaattatcttccacttccagggataattcacaaaactcgattccaccaaacggagctttcccgcatt 38813953  T
Q  209 tcgaccaaataaactaatagggatatcacggtcaatattttgtattaaatcgtgcatcgcagaacatagtagtttgttaaaattcaatctctataagatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38813952 tcgaccaaataaactaatagggatatcacggtcaatattttgtattaaatcgtgcatcgcagaacatagtagtttgttaaaattcaatctctataagatg 38813853  T
Q  309 caattaaataagggtcatgctaagttaaggattcaaaaaaggaaacagttgataaatttatgtagnnnnnnnttctttttaatgtttcaatgtgttgaat 408  Q
    |||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||       ||||||||||||||||||| ||||||||    
T  38813852 caattaaataagggtcatgctaagttaaggattcaaaaaag-----agttgataaatttatgtagaaaaaaattctttttaatgtttcaatatgttgaat 38813758  T
Q  409 acacaattcccaagataaatttttcattttgaactacttaacaaatgcctttgggaacttgttagca 475  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38813757 acacaattcccaagataaatttttcattttgaacttcttaacaaatgcctttgggaacttgttagca 38813691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 39462375 - 39462243
Alignment:
Q  22 ctgagtttctccctcatctttttgcaaaaagccgctccacggttgtaaagtctctcgtcttgtgtaatggctgaagtgacagtagtcacaatgaa-cccc 120  Q
    |||||||||||||||||||||||||| ||||| ||||| | || ||||||  |||||||   |||| ||||  ||||||||||||||||| |||| || |    
T  39462375 ctgagtttctccctcatctttttgcagaaagcggctcc-ccgtggtaaag--tctcgtcaaatgtattggccaaagtgacagtagtcacattgaatcctc 39462279  T
Q  121 gaatatcatttgaagatctcaaaattatcttccactt 157  Q
    ||||||  || |||||||| ||||| |||||||||||    
T  39462278 gaatat-tttcgaagatctaaaaataatcttccactt 39462243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 475
Target Start/End: Complemental strand, 42964845 - 42964754
Alignment:
Q  384 tttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaaatg-cctttgggaacttgttagca 475  Q
    ||||| ||||||||||||||||||||||||| |||||||||||| ||| || ||| |||| |||| ||| || |||  |||||||||||||||    
T  42964845 tttttgatgtttcaatgtgttgaatacacaa-tcccaagataaaatttccactttaaacttcttatcaagtgccctaggggaacttgttagca 42964754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 472
Target Start/End: Original strand, 14548223 - 14548302
Alignment:
Q  393 tttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaaatgcctttgggaacttgtta 472  Q
    |||||| ||||||||||||||| | |||||||||| |||  | |||||| | |||||||| |||||| ||| ||||||||    
T  14548223 tttcaacgtgttgaatacacaaattccaagataaagtttctactttgaatttcttaacaagtgccttggggcacttgtta 14548302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 32615896 - 32615853
Alignment:
Q  384 tttttaatgtttcaatgtgttgaatacacaattcccaagataaa 427  Q
    ||||||||||||||||||||||||||||| | | ||||||||||    
T  32615896 tttttaatgtttcaatgtgttgaatacacgaattccaagataaa 32615853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 475
Target Start/End: Original strand, 32203079 - 32203164
Alignment:
Q  391 tgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaaatg-cctttgggaacttgttagca 475  Q
    ||||||||||| || ||| ||||||| ||||| |||| ||| |||||| |||  ||||||||||| |||  |||||||||||||||    
T  32203079 tgtttcaatgtattcaatgcacaatttccaaggtaaagtttccattttaaacgccttaacaaatgtcctaagggaacttgttagca 32203164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 34462035 - 34462080
Alignment:
Q  403 ttgaatacacaattcccaagataaatttttcattttgaactactta 448  Q
    ||||||||||||||| ||||||||| |||||||||| |||| ||||    
T  34462035 ttgaatacacaattctcaagataaaattttcattttaaacttctta 34462080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 483 - 998
Target Start/End: Complemental strand, 4837263 - 4836747
Alignment:
Q  483 aacacaacttcacaaagacgtcagcagaccattgtgtgtttgtgaagaactatgaaaatggagagtccatcatacttttattgtatgttgatgatatgct 582  Q
    ||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  4837263 aacacaatttcacaaagacgtcaacagatcattgcgtgtttgtgaagaactatgaaaatggagaatccatcatactcttattgtatgttgatgatatgct 4837164  T
Q  583 tattgttggaaaagataaagcaaagatagctgctctcaagaaagcattgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttgga 682  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4837163 tattgttggaaaagataaagcaaagatagatgctctcaagaaagctttgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttgga 4837064  T
Q  683 atgaagatcattagagatcgattaaaaagaatgttgtggatgtcacaagaagaatatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaac 782  Q
    ||||||||| |||||||||| |  ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  4837063 atgaagatcgttagagatcgttctaaaagaatgttgtggatgtcacaagaagattatatcaagaaagttcttgaaaggttcaacatgcataatgcaaaac 4836964  T
Q  783 ctgtgcatgttccattacctggtcatttgaaactcaataagacacaatgtcccgagaatgaccgagagaaagaagaaatgagcaaggtgccctattcttc 882  Q
    || ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||    
T  4836963 ctatgcatgttccactacctggtcatttgaaactcagtaagacacaatgtcctgagaatgaccaagagaaagaagaaatgagcaaggttccctattcttc 4836864  T
Q  883 agccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcgggttatgcagtaggagtcgtgagtagattcatatcaaatc--agaaaaga 980  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||||| ||||||| |   |||| ||    
T  4836863 agctgtgggtagccttatgtacgccatggtctacacgaggccagacatc-ggttatgttgtaggagtcgtgagtagattcctatcaaacccaggaaagga 4836765  T
Q  981 acactggagtgctgtgaa 998  Q
    ||||||||||||||||||    
T  4836764 acactggagtgctgtgaa 4836747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 7399894 - 7399850
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaa 427  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||    
T  7399894 ctttttaatgtttcaatgtgttgaataaacaacttccaagataaa 7399850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 34004822 - 34004870
Alignment:
Q  390 atgtttcaatgtgttgaatacacaattcccaagataaatttttcatttt 438  Q
    |||||||||||||||| |||||||| | |||||||||||||| ||||||    
T  34004822 atgtttcaatgtgttgcatacacaaattccaagataaattttccatttt 34004870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 28198010 - 28198102
Alignment:
Q  332 gttaaggattcaaaaaaggaaacagttgataaa-tttatgtagnnnnnnnttctttttaatgtttcaatgtgttgaatacacaattcccaaga 423  Q
    ||||||||||||||| |||||| | || ||||| |||||||||       |||||||| | |||||||||| |||||||||||||| ||||||    
T  28198010 gttaaggattcaaaagaggaaataatttataaaatttatgtagaaaaagtttctttttgaagtttcaatgtcttgaatacacaatttccaaga 28198102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 392 - 421
Target Start/End: Complemental strand, 7936067 - 7936038
Alignment:
Q  392 gtttcaatgtgttgaatacacaattcccaa 421  Q
    ||||||||||||||||||||||||||||||    
T  7936067 gtttcaatgtgttgaatacacaattcccaa 7936038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 491 - 962
Target Start/End: Complemental strand, 54968921 - 54968451
Alignment:
Q  491 ttcacaaagacgtcagcagaccattgtgtgtttgtgaagaactatgaaaatggagagtccatcatacttttattgtatgttgatgatatgcttattgttg 590  Q
    |||||||||| |||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  54968921 ttcacaaagatgtcaacagatcattgcgtgtttgtgaagaactatgaaaatggagaatccatcatactcttattgtatgttgatgatatgcttattgttg 54968822  T
Q  591 gaaaagataaagcaaagatagctgctctcaagaaagcattgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttggaatgaagat 690  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54968821 gaaaagataaagcaaagatagctgctctcaagaaagctttgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttggaatgaagat 54968722  T
Q  691 cattagagatcgattaaaaagaatgttgtggatgtcacaagaagaatatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcat 790  Q
    | |||||||||| |  ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54968721 cgttagagatcgttctaaaagaatgttgtggatgtcacaagaagattatatcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcat 54968622  T
Q  791 gttccattacctggtcatttgaaactcaataagacacaatgtcccgagaatgaccgagagaaagaagaaatgagcaaggtgccctattcttcagccgtgg 890  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  54968621 gttccactacctggtcatttgaaactcagtaagacacaatgtcctgagaatgaccaagagaaagaagaaatgagcaaggtgccctattcttcagctgtgg 54968522  T
Q  891 gtagccttatgtacgccatggtctgcacgaggccagacatcgggttatgcagtaggagtcgtgagtagattc 962  Q
    |||||||||||||||| ||||| ||||| || ||||||||  | |||||| |||||||| ||||||||||||    
T  54968521 gtagccttatgtacgcaatggtttgcacaagaccagacat-tgcttatgcggtaggagttgtgagtagattc 54968451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 483 - 664
Target Start/End: Complemental strand, 4283774 - 4283592
Alignment:
Q  483 aacacaacttcacaaagacgtcagcagaccattgtgtgtttgtga-agaactatgaaaatggagagtccatcatacttttattgtatgttgatgatatgc 581  Q
    ||||||| ||||||||||| |||||| |||| | ||||||||||| | ||||||| ||||||||| ||||||||| |||| ||||||||||| ||||||     
T  4283774 aacacaatttcacaaagacatcagcaaaccactatgtgtttgtgataaaactatggaaatggagaatccatcataattttgttgtatgttgacgatatgg 4283675  T
Q  582 ttattgttggaaaagataaagcaaagatagctgctctcaagaaagcattgagcaaatcttttgctatgaaggatttgggtgca 664  Q
    || ||||||| ||||||||  | ||||||  |||| ||||||| ||||||||||||||||||| |||||| ||| | ||||||    
T  4283674 ttgttgttgggaaagataagaccaagataattgctatcaagaaggcattgagcaaatcttttgttatgaaagatctaggtgca 4283592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 31375562 - 31375522
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaaga 423  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  31375562 ctttttaaagtttcaatgtgttgaatacacaatttccaaga 31375522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 31732124 - 31732168
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaa 427  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||    
T  31732124 ctttttgatgtttcaatatgttgaatacacaaatcccaagataaa 31732168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 391 - 457
Target Start/End: Original strand, 23512796 - 23512862
Alignment:
Q  391 tgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaaatgcc 457  Q
    ||||||||||| |||||| |||||||||||||||||| |||| | ||| || | || ||||||||||    
T  23512796 tgtttcaatgtcttgaatgcacaattcccaagataaaatttttactttaaatttctaaacaaatgcc 23512862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 31596290 - 31596257
Alignment:
Q  394 ttcaatgtgttgaatacacaattcccaagataaa 427  Q
    ||||||||||||||||||||||||||||| ||||    
T  31596290 ttcaatgtgttgaatacacaattcccaaggtaaa 31596257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 42461358 - 42461411
Alignment:
Q  390 atgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaact 443  Q
    |||||||||||||||||||| |||| ||  ||||||||||||||| ||| ||||    
T  42461358 atgtttcaatgtgttgaatatacaaatcttaagataaatttttcactttaaact 42461411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 491 - 962
Target Start/End: Original strand, 1226 - 1696
Alignment:
Q  491 ttcacaaagacgtcagcagaccattgtgtgtttgtgaagaactatgaaaatggagagtccatcatacttttattgtatgttgatgatatgcttattgttg 590  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |    
T  1226 ttcacaaagacgtcaacagatcattgcgtgtttgtgaagaactatgaaaatggagaatccatcatactcttattgtatgttgatgacatgcttattgtcg 1325  T
Q  591 gaaaagataaagcaaagatagctgctctcaagaaagcattgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttggaatgaagat 690  Q
    |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326 gaaaagataaagcaaagatagctgctctgaagaaagctttgagtaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttggaatgaagat 1425  T
Q  691 cattagagatcgattaaaaagaatgttgtggatgtcacaagaagaatatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcat 790  Q
    | |||||||||| |  ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1426 cgttagagatcgttccaaaagaatgttgtggatgtcacaagaagattacatcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcat 1525  T
Q  791 gttccattacctggtcatttgaaactcaataagacacaatgtcccgagaatgaccgagagaaagaagaaatgagcaaggtgccctattcttcagccgtgg 890  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  1526 gttccactacctggtcatttgaaactcaataagacacaatgtcctgagaatgaccaagagaaagaagaaatgagcaaggtgccctattcttcagctgtgg 1625  T
Q  891 gtagccttatgtacgccatggtctgcacgaggccagacatcgggttatgcagtaggagtcgtgagtagattc 962  Q
    | |||||||||||||| ||||| ||||| || ||||||||  | |||||| |||||||| ||||||||||||    
T  1626 gaagccttatgtacgcaatggtttgcacaagaccagacat-tgcttatgcggtaggagttgtgagtagattc 1696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 616 - 816
Target Start/End: Complemental strand, 25004785 - 25004585
Alignment:
Q  616 tctcaagaaagcattgagcaaatcttttgctatgaaggatttgggtgcagtgaagaagattcttggaatgaagatcattagagat--cgattaaaaagaa 713  Q
    |||||||||  |||||| ||||||||||||||||||  |  |||||||||||||||| ||||||  |||||| ||| ||| ||||  || |  |||| ||    
T  25004785 tctcaagaagacattgaccaaatcttttgctatgaaaaacatgggtgcagtgaagaaaattctta-aatgaaaatcgttaaagatatcgttctaaaataa 25004687  T
Q  714 tgttgtggatgtcacaagaagaatatctcaagaaagttcttgaaaggttcaacatgcataatgcaaaacctgtgcatgttccattacctggtcatttgaa 813  Q
    |||||||||||||| ||||||  ||| |||| | |||| |||||| ||||||| |||| ||| ||  || ||||||||||||| || |||||||||||||    
T  25004686 tgttgtggatgtcaaaagaagtttatatcaaaacagtttttgaaatgttcaacgtgcaaaatacaccacttgtgcatgttccacta-ctggtcatttgaa 25004588  T
Q  814 act 816  Q
    |||    
T  25004587 act 25004585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 39753991 - 39753938
Alignment:
Q  390 atgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaact 443  Q
    |||||||||||| |||||||||||| ||| ||||||||  ||||||||| ||||    
T  39753991 atgtttcaatgtattgaatacacaaatcctaagataaaactttcattttaaact 39753938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 855 - 961
Target Start/End: Complemental strand, 22982486 - 22982381
Alignment:
Q  855 aagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcgggttatgcagtaggagtcgtga 954  Q
    |||||||||||||||||||||||||||| |  ||||||||||||||||||||  |||| ||||| || ||||||||  | |||||| |||||| | ||||    
T  22982486 aagaaatgagcaaggtgccctattcttctgttgtgggtagccttatgtacgcattggtttgcacaagaccagacat-tgcttatgcggtaggaattgtga 22982388  T
Q  955 gtagatt 961  Q
    |||||||    
T  22982387 gtagatt 22982381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 855 - 961
Target Start/End: Original strand, 23805922 - 23806027
Alignment:
Q  855 aagaaatgagcaaggtgccctattcttcagccgtgggtagccttatgtacgccatggtctgcacgaggccagacatcgggttatgcagtaggagtcgtga 954  Q
    |||||||||||||||||||||||||||| |  ||||||||||||||||||||  |||| ||||| || ||||||||  | |||||| |||||| | ||||    
T  23805922 aagaaatgagcaaggtgccctattcttctgttgtgggtagccttatgtacgcattggtttgcacaagaccagacat-tgcttatgcggtaggaattgtga 23806020  T
Q  955 gtagatt 961  Q
    |||||||    
T  23806021 gtagatt 23806027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 390 - 459
Target Start/End: Complemental strand, 30326728 - 30326659
Alignment:
Q  390 atgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaaatgcctt 459  Q
    ||||||||||||||||||||||||| |||||||||||| ||| |||||| |||| |||| ||||||||||    
T  30326728 atgtttcaatgtgttgaatacacaaatcccaagataaaatttccattttaaacttcttatcaaatgcctt 30326659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 343008 - 342949
Alignment:
Q  384 tttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaact 443  Q
    |||||||||||||||||||||||||||| || | |||| | ||| |||||||||| ||||    
T  343008 tttttaatgtttcaatgtgttgaatacataaattccaaaacaaaattttcattttaaact 342949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 414
Target Start/End: Complemental strand, 2248773 - 2248742
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaa 414  Q
    ||||||||||||||||||||||||||||||||    
T  2248773 ctttttaatgtttcaatgtgttgaatacacaa 2248742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 41885023 - 41884954
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaa 452  Q
    ||||||||||||||||||| |||| ||||||||||||||  |||| |||||||||| | || ||||||||    
T  41885023 ctttttaatgtttcaatgtcttgattacacaattcccaatgtaaagttttcattttaatcttcttaacaa 41884954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 452
Target Start/End: Original strand, 2571040 - 2571108
Alignment:
Q  384 tttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaa 452  Q
    ||||||| ||||||||||||||||||||  |||||||||||||| ||| | |||| |||| ||||||||    
T  2571040 tttttaaagtttcaatgtgttgaatacatcattcccaagataaaatttcctttttaaacttcttaacaa 2571108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 31963041 - 31963106
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactactta 448  Q
    |||||||||||||||||||||||||||||||| | |||| | ||| ||| |||||| |||| ||||    
T  31963041 ctttttaatgtttcaatgtgttgaatacacaaattccaaaacaaaatttccattttaaacttctta 31963106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 42592732 - 42592825
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaaatgcctttggga-acttgttagca 475  Q
    |||||||| ||||||||| ||||||||||||| | ||||||||||  || || ||| |||| |||| ||||| || |||||| |||||||||||    
T  42592732 ctttttaacgtttcaatgggttgaatacacaacttccaagataaaccttccactttaaacttcttatcaaatacccttgggacacttgttagca 42592825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 44698092 - 44698048
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaa 427  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||    
T  44698092 ctttttaatgtttcaatatgttgaatacacaacttccaagataaa 44698048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 393 - 423
Target Start/End: Complemental strand, 52698484 - 52698454
Alignment:
Q  393 tttcaatgtgttgaatacacaattcccaaga 423  Q
    |||||||||||||||||||||||||||||||    
T  52698484 tttcaatgtgttgaatacacaattcccaaga 52698454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 1411742 - 1411673
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaa 452  Q
    ||||||||  |||||||||||||||||||  ||||| |||||||| ||| | |||| |||| ||||||||    
T  1411742 ctttttaaactttcaatgtgttgaatacatcattcctaagataaaatttcctttttaaacttcttaacaa 1411673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 9433848 - 9433795
Alignment:
Q  390 atgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaact 443  Q
    ||||||||||||||||||||||||| ||| |||| ||| | |||| ||||||||    
T  9433848 atgtttcaatgtgttgaatacacaaatccgaagacaaaatgttcactttgaact 9433795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 384 - 449
Target Start/End: Complemental strand, 14444420 - 14444355
Alignment:
Q  384 tttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaa 449  Q
    ||||||| |||||||  |||||||||| |||||||||||||||| |||   ||||||||| |||||    
T  14444420 tttttaaagtttcaagatgttgaatacgcaattcccaagataaactttcttttttgaacttcttaa 14444355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 27262793 - 27262858
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactactta 448  Q
    ||||||||||||| |||||||||||||||||| | | |||| ||| ||| |||||| |||| ||||    
T  27262793 ctttttaatgttttaatgtgttgaatacacaaattctaagacaaaatttccattttaaacttctta 27262858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 34040779 - 34040742
Alignment:
Q  384 tttttaatgtttcaatgtgttgaatacacaattcccaa 421  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  34040779 tttttaatgtttctatgtgttgaatacacaatttccaa 34040742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 52478378 - 52478431
Alignment:
Q  384 tttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattt 437  Q
    |||||||||||||||||| ||||||||| |  || ||||||||| |||||||||    
T  52478378 tttttaatgtttcaatgtattgaatacaaatatcacaagataaaattttcattt 52478431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 1944801 - 1944753
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaatttt 431  Q
    ||||||||||||||||||| |||||||||||| | |||||| |||||||    
T  1944801 ctttttaatgtttcaatgtattgaatacacaaattccaagacaaatttt 1944753  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 11074552 - 11074592
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaaga 423  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  11074552 cttttttatgtttcaatgtgttgaatacacaaatcccaaga 11074592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 383 - 452
Target Start/End: Complemental strand, 8701106 - 8701037
Alignment:
Q  383 ctttttaatgtttcaatgtgttgaatacacaattcccaagataaatttttcattttgaactacttaacaa 452  Q
    ||||||| ||||| ||||||||||||||| ||||   |||||||| |||| ||||| |||| ||||||||    
T  8701106 ctttttattgttttaatgtgttgaatacataatttttaagataaaatttttattttaaacttcttaacaa 8701037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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