View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853R-Insertion-13 (Length: 490)
Name: NF2853R-Insertion-13
Description: NF2853R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853R-Insertion-13 |
 | |
|
| [»] chr1 (8 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Original strand, 10465478 - 10465954
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10465478 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcttgttcaacctcttttcccctaaaatcttgcacaatgccacaacgggcttctctt |
10465577 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10465578 |
gtccaccttcttaaaatatacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgggaacaaagtatgccaaatgtatcatact |
10465677 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
10465678 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgtttcgtattagtaatgacatattcacatagagagtc |
10465777 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaactcgaatatannnnnnnnnnnnnnnnatatctttcccatt |
407 |
Q |
| |
|
|| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
10465778 |
agtttcatgtctaataggtatagacaaagccaagaataacttaaactcgttttgaaacaactcaaatata------gtgtgtgtgtatatctttcccatt |
10465871 |
T |
|
| Q |
408 |
tggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcataatcacatttcagttctttttctct |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10465872 |
tggattagtaatggtgaagtttcatacactaaccttgcaagcttatgtgaggactcataatcacatttcagttctttttctct |
10465954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Original strand, 43735130 - 43735606
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43735130 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcttgttcaacctcttttcccctaaaatcttgcacaatgccacaacgggcttctctt |
43735229 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43735230 |
gtccaccttcttaaaatatacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgggaacaaagtatgccaaatgtatcatact |
43735329 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
43735330 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgtttcgtattagtaatgacatattcacatagagagtc |
43735429 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaactcgaatatannnnnnnnnnnnnnnnatatctttcccatt |
407 |
Q |
| |
|
|| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
43735430 |
agtttcatgtctaataggtatagacaaagccaagaataacttaaactcgttttgaaacaactcaaatata------gtgtgtgtgtatatctttcccatt |
43735523 |
T |
|
| Q |
408 |
tggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcataatcacatttcagttctttttctct |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43735524 |
tggattagtaatggtgaagtttcatacactaaccttgcaagcttatgtgaggactcataatcacatttcagttctttttctct |
43735606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 7282060 - 7282429
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7282060 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcttgttcaacctcttttcccctaaaatcttgcacaatgccacaacgggcttctctt |
7282159 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7282160 |
gtccaccttcttaaaatatacatatcagaaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
7282259 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
7282260 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgtttcgtattagtgatgacatattcacatagagagtc |
7282359 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaactcgaatata |
377 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7282360 |
agtttcatgtctaataggtacagacaaagccaagaataacttaaactcgttttgaaacaactcaaatata |
7282429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 11473822 - 11473463
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||| | |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11473822 |
agagacaacttgtctgaacattcgatttctagacaagttaggatctccttcaacctcctttcccctaaaatcttgcacaacgccataacgggcttctctt |
11473723 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
||||||||| |||||||| | | |||||||| || |||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||| | | |
|
|
| T |
11473722 |
gtccacctttttaaaatatagttgtcaggaattaccttaacatcattcaattcaaacacttttaaagcatgtgaacaaagtatgccaaaagtatcaaatt |
11473623 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|| ||||||||||||| |||||| |||||||||| |||||||| ||||| ||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
11473622 |
tcctacaactacaagtgatggaatttgaaacacggttaaatgaaactctccaagatccttcatgttttgcctttgtgatgacatattcacaaagagagtc |
11473523 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaa |
367 |
Q |
| |
|
|| |||||||||||| |||||||| |||| ||||||||||||||||| | ||||||||| |
|
|
| T |
11473522 |
agattcatgtctaattggtacagataaagttaagaataacttaaactcatcttgaaacaa |
11473463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 28246214 - 28246573
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||| | | | |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28246214 |
agagacaacttgtctgaacattcgatttctagacaagttaggatctccttcaatctcctttcccctaaaatcttgcacaacgccataacgggcttctctt |
28246313 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
||||||||| |||||||| | | |||||||| || |||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||| | | |
|
|
| T |
28246314 |
gtccacctttttaaaatatagttctcaggaattaccttaacatcattcaattcaaacacttttaaagcatgtgaacaaagtatgccaaaagtatcaaatt |
28246413 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|| ||||||||||||| |||||| |||||||||| |||||||| ||||| ||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
28246414 |
tcctacaactacaagtgatggaatttgaaacacggttaaatgaaactcttcaagatccttcatgttttgcctttgtgatgacatattcacaaagagagtc |
28246513 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaa |
367 |
Q |
| |
|
|| |||||||||||| |||||||| |||| ||||||||||||||||| | ||||||||| |
|
|
| T |
28246514 |
agattcatgtctaattggtacagataaagttaagaataacttaaactcatcttgaaacaa |
28246573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 7282461 - 7282556
Alignment:
| Q |
395 |
tatctttcccatttggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcataatcacatttcagttctttttctct |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7282461 |
tatctttcccatttggattagtaatggtgaagtttcatacactaaccttgcaagcttatgtgaggactcataatcacatttcagttctttttctct |
7282556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 28246621 - 28246688
Alignment:
| Q |
399 |
tttcccatttggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcata |
466 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||| ||||| ||||| |
|
|
| T |
28246621 |
tttcccatttggattagtattggtgcagtttcatatgctaaccttgcaagcttatgggaggattcata |
28246688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 466
Target Start/End: Complemental strand, 11473437 - 11473370
Alignment:
| Q |
399 |
tttcccatttggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcata |
466 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||| |||||||||| |||||||| ||||| ||||| |
|
|
| T |
11473437 |
tttcccatttgaattagtattggtgcagtttcatatgctaaccttgcaagcttatgggaggattcata |
11473370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 25862528 - 25862054
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25862528 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcttgttcaacctcttttcccctaaaatcttgcacaatgccacaacgggcttctctt |
25862429 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25862428 |
gtccaccttcttaaaatatacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatggcaaatgtatcatact |
25862329 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25862328 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgtttcttattagtgatgacatattcacatagagagtc |
25862229 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaactcgaatatannnnnnnnnnnnnnnnatatctttcccatt |
407 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
25862228 |
agtttcatgtctaataggtacagacaaagccaagaataactt--actcgttttgaaacaactcaaatata------gtatgtgtgtatatctttcccatt |
25862137 |
T |
|
| Q |
408 |
tggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcataatcacatttcagttctttttctct |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25862136 |
tggattagtaatggtgaagtttcatacactaaccttgcaagcttatgtgaggactcataatcacatttaagttctttttctct |
25862054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 5911090 - 5910721
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5911090 |
agagaaaacttgtctgaacattcgatttctagacaacttaggatcttgttcaacctcttttcccctaaaatcttgcacaatgccacaacgggcttctctt |
5910991 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
5910990 |
gtccatcttcttaaaatatacatatcaggaatcactttaacatcgttcaactcaaacacttttaatccatgcgaacaaagtatgccaaatgtttcatact |
5910891 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5910890 |
tcttacaactacaagtaattgaagttgaaacacgattaaatgacactctaaaagatccttcatgtttcttattagtgatgacatattcacatagagagtc |
5910791 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaactcgaatata |
377 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5910790 |
agtttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaactcaaatata |
5910721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 5910678 - 5910582
Alignment:
| Q |
394 |
atatctttcccatttggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcataatcacatttcagttctttttctct |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5910678 |
atatctttcccatttggattagtaatggtgaagtttcatacactaaccttgcaagcttatgtgaggactcataatcacatttcagttctttttctct |
5910582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 22981934 - 22981720
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
||||||| ||||||| || |||| |||| |||||||||| ||||| | ||| | | ||||| ||||||| | || ||||| ||| |||||||||||||| |
|
|
| T |
22981934 |
agagacagcttgtctaaatattcaatttatagacaactttggatcttattcaagctattttctcctaaaaccgtgtacaattccacaacgggcttctctt |
22981835 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
||||||||||||||||| || | | |||||| || |||||||| |||| | ||||||||||||||| ||| ||||||||| |||||||||| ||| ||| |
|
|
| T |
22981834 |
atccaccttcttaaaatatacttcttaggaataaccttaacatcattcaacccaaacacttttaatgtatgggaacaaagtgtgccaaatgt-tcaaact |
22981736 |
T |
|
| Q |
208 |
tcttacaactacaagt |
223 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
22981735 |
tcctgcaactacaagt |
22981720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 38253044 - 38253403
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||| | |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38253044 |
agagacaacttgtctgaacattcgatttctagacaagttaggatctccttcaacctcctttcccctaaaatcttgcacaacgccataacgggcttctctt |
38253143 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
||||||||| |||||||| | | |||||||| || |||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||| | | |
|
|
| T |
38253144 |
gtccacctttttaaaatatagttgtcaggaattaccttaacatcattcaattcaaacacttttaaagcatgtgaacaaagtatgccaaaagtatcaaatt |
38253243 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|| ||||||||||||| |||||| |||||||||| |||||||| ||||| ||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
38253244 |
tcctacaactacaagtgatggaatttgaaacacggttaaatgaaactctccaagatccttcatgttttgcctttgtgatgacatattcacaaagagagtc |
38253343 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaa |
367 |
Q |
| |
|
|| |||||||||||| |||||||| |||| ||||||||||||||||| | ||||||||| |
|
|
| T |
38253344 |
agattcatgtctaattggtacagataaagttaagaataacttaaactcatcttgaaacaa |
38253403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 43156498 - 43156139
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||| | |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43156498 |
agagacaacttgtctgaacattcgatttctagacaagttaggatctccttcaacctcctttcccctaaaatcttgcacaacgccataacgggcttctctt |
43156399 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
||||||||| |||||||| | | |||||||| || |||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||| | | |
|
|
| T |
43156398 |
gtccacctttttaaaatatagttgtcaggaattaccttaacatcattcaattcaaacacttttaaagcatgtgaacaaagtatgccaaaagtatcaaatt |
43156299 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|| ||||||||||||| |||||| |||||||||| |||||| | ||||| ||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
43156298 |
tcctacaactacaagtgatggaatttgaaacacggttaaattaaactctccaagatccttcatgttttgcctttgtgatgacatattcacaaagagagtc |
43156199 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaa |
367 |
Q |
| |
|
|| |||||||||||| |||||||| |||| ||||||||||||||||| | ||||||||| |
|
|
| T |
43156198 |
agattcatgtctaattggtacagataaagttaagaataacttaaactcatcttgaaacaa |
43156139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 38253429 - 38253496
Alignment:
| Q |
399 |
tttcccatttggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcata |
466 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||| |||||||||| |||||||| ||||| ||||| |
|
|
| T |
38253429 |
tttcccatttgaattagtattggtgcagtttcatatgctaaccttgcaagcttatgggaggattcata |
38253496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 466
Target Start/End: Complemental strand, 43156113 - 43156046
Alignment:
| Q |
399 |
tttcccatttggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcata |
466 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||| |||||||||| |||||||| ||||| ||||| |
|
|
| T |
43156113 |
tttcccatttgaattagtattggtgcagtttcatatgctaaccttgcaagcttatgggaggattcata |
43156046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 19307906 - 19308265
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| | |||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19307906 |
agagacaacttgtctgaacattcgatttctagacaacttgggatctccttcaacctcctttcgcctaaaatcttgcacaacgccataacgggcttctctt |
19308005 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
||||||||| |||||||| | | |||||||| || |||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||| | | |
|
|
| T |
19308006 |
gtccacctttttaaaatatagttctcaggaattaccttaacatcattcaattcaaacacttttaaagcatgtgaacaaagtatgccaaaagtatcaaatt |
19308105 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|| ||||||||||||| |||||| |||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
19308106 |
tcctacaactacaagtgatggaatttgaaacacggttaaatgaaactctccaagatccttcatgttttgccttagtgatgacataatcacaaagagagtc |
19308205 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaa |
367 |
Q |
| |
|
| |||||||||||| |||||||| |||| ||||||||||||||||| | ||||||||| |
|
|
| T |
19308206 |
aaattcatgtctaattggtacagataaagttaagaataacttaaactcatcttgaaacaa |
19308265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 10124234 - 10124592
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||| | |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10124234 |
agagacaacttgtctgaacattcgatttctagacaagttaggatctccttcaacctcatttcccctaaaatcttgcacaacgccataacgggcttctctt |
10124333 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
||||||||| |||||||| | | |||||||| || |||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||| | | |
|
|
| T |
10124334 |
gtccacctttttaaaatatagttctcaggaattaccttaacatcattcaattcaaacacttttaaagcatgtgaacaaagtatgccaaaagtatcaaatt |
10124433 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||| |||||||| ||||| |||||| |||||||| || ||||||| ||||||||| |||||||| |
|
|
| T |
10124434 |
tcctacaactacaagtgatggaatttgaaacacagttaaatgaaactctccaagatcattcatgttttgcctttgtgatga-atattcacaaagagagtc |
10124532 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaa |
367 |
Q |
| |
|
|| |||||||||||| |||||||| |||| ||||||||||||||||| | ||||||||| |
|
|
| T |
10124533 |
agattcatgtctaattggtacagataaagttaagaataacttaaactcatcttgaaacaa |
10124592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 19308307 - 19308374
Alignment:
| Q |
399 |
tttcccatttggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcata |
466 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
19308307 |
tttcccatttggattagtattggtgcagtttcatatgctaaccttgcaagcttatgtgaggattcata |
19308374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 10124618 - 10124685
Alignment:
| Q |
399 |
tttcccatttggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcata |
466 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| ||| |||||| |||||||| ||||| ||||| |
|
|
| T |
10124618 |
tttcccatttggattagtattggtgcagtttcatatgctatccttgcaagcttatgggaggattcata |
10124685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 8 - 466
Target Start/End: Complemental strand, 25381935 - 25381481
Alignment:
| Q |
8 |
agagacaacttgtctgaacattcgatttctagacaacttaggatcatgttcgaccccttttcccctaaaatcttgcacaatgccataacgggcttctctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| || ||| ||| | |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25381935 |
agagacaacttgtctgaacattcgatttctagacaagttaggttctccttcaacctcctttcccctaaaatcttgcacaacgccataacgggcttctctt |
25381836 |
T |
|
| Q |
108 |
gtccaccttcttaaaatacacatatcaggaatcactttaacatcgttcagctcaaacacttttaatgcatgcgaacaaagtatgccaaatgtatcatact |
207 |
Q |
| |
|
||||||||| |||||||| | | |||||||| | |||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||| | | |
|
|
| T |
25381835 |
gtccacctttttaaaatatagttctcaggaatttccttaacatcattcaattcaaacacttttaaagcatgtgaacaaagtatgccaaaagtatcaaatt |
25381736 |
T |
|
| Q |
208 |
tcttacaactacaagtaatggaagttgaaacacgattaaatgacactctaaaagatccttcatgttccttattagtgatgacatattcacatagagagtc |
307 |
Q |
| |
|
| ||||||||||||| |||||| |||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
25381735 |
ttctacaactacaagtgatggaatttgaaacacggttaaatgaaactctccaagatccttcatgttttgccttagtgatgacatattcacaaagagagtc |
25381636 |
T |
|
| Q |
308 |
aggttcatgtctaatgggtacagacaaagccaagaataacttaaactcgttttgaaacaactcgaatatannnnnnnnnnnnnnnnatatctttcccatt |
407 |
Q |
| |
|
|| ||||||||||| |||||| | |||| ||||||||||||||||| | ||||||||| || |||| | || | ||||||||| |
|
|
| T |
25381635 |
agattcatgtctaactggtacatataaagttaagaataacttaaactcatcttgaaacaattcaaataca----gtgtgtgtgtgtatgtttttcccatt |
25381540 |
T |
|
| Q |
408 |
tggattagtaatggtgaagtttcatacactaaccttgcgagcttatgtgaggactcata |
466 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
25381539 |
tggattagtattggtgcagtttcatatgctaaccttgcaagcttatgtgaggattcata |
25381481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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