View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853R-Insertion-14 (Length: 270)

Name: NF2853R-Insertion-14
Description: NF2853R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853R-Insertion-14
NF2853R-Insertion-14
[»] chr6 (3 HSPs)
chr6 (9-270)||(5539888-5540149)
chr6 (17-269)||(5550672-5550919)
chr6 (87-156)||(34589807-34589876)
[»] chr3 (3 HSPs)
chr3 (76-150)||(15801456-15801529)
chr3 (75-160)||(15801699-15801784)
chr3 (73-156)||(26936779-26936860)
[»] chr1 (5 HSPs)
chr1 (75-160)||(38474803-38474888)
chr1 (75-133)||(4557003-4557061)
chr1 (101-158)||(12287503-12287560)
chr1 (95-160)||(5085820-5085885)
chr1 (92-160)||(46631260-46631328)
[»] chr2 (8 HSPs)
chr2 (76-160)||(41513781-41513865)
chr2 (87-160)||(8951368-8951441)
chr2 (79-156)||(2420000-2420077)
chr2 (76-160)||(33459162-33459246)
chr2 (80-160)||(42510694-42510774)
chr2 (80-135)||(38125395-38125450)
chr2 (20-75)||(45209490-45209545)
chr2 (76-109)||(41066389-41066422)
[»] chr8 (3 HSPs)
chr8 (76-155)||(13054302-13054381)
chr8 (87-137)||(11567573-11567623)
chr8 (98-153)||(37384734-37384789)
[»] chr5 (1 HSPs)
chr5 (92-160)||(35138563-35138631)
[»] chr4 (1 HSPs)
chr4 (76-160)||(20642336-20642420)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 5539888 - 5540149
Alignment:
Q  9 aaattcggcgcacttggactgtaaccacacagaaaaaggaaatgtgtgagtgtataatgttaatttcgagtaaatagacattttagtcattgaaattgta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5539888 aaattcggcgcacttggactgtaaccacacagaaaaaggaaatgtgtgagtgtataatgttaatttcgagtaaatagacattttagtcattgaaattgta 5539987  T
Q  109 agggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctttacaatttcaaggactaaaatatataatatcaaatttgagggagttaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5539988 agggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctttacaatttcaaggactaaaatatataatatcaaatttgagggagttaa 5540087  T
Q  209 ttcaccgacccgtttagaagaaaatcatatatcaaaagtagtgaaatcttactctacacagg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5540088 ttcaccgacccgtttagaagaaaatcatatatcaaaagtagtgaaatcttactctatacagg 5540149  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 5550919 - 5550672
Alignment:
Q  17 cgcacttggactgtaaccacacagaaaaaggaaatgtgtgagtgtataatgttaatttcgagtaaatagacattttagtcattgaaattgtaagggtcag 116  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  5550919 cgcacttggactgtaaccacacagaaaaaggaaatgtg--agtgtata---ttaatttcgagtaaatagacattttagtctttgaaattgtaagggtctg 5550825  T
Q  117 tcaattcaatccctcaaatttgtgaaatagcaatttagtccctttacaatttcaaggactaaaatatataatatcaaatttgagggagttaattcaccga 216  Q
    |||||| ||||||||||||||   ||| ||||||||  |||| ||||||||||||| |||||| |  | |||||||||||||||||| |  ||| ||| |    
T  5550824 tcaatttaatccctcaaattttcaaaaaagcaatttcatccccttacaatttcaagtactaaagtgcaaaatatcaaatttgagggactacattgaccaa 5550725  T
Q  217 cccgtttagaagaaaatcatatatcaaaagtagtgaaatcttactctacacag 269  Q
    |||| ||||||| |||| ||||||||| |||||||| ||||||||||| ||||    
T  5550724 cccgcttagaaggaaattatatatcaagagtagtgatatcttactctatacag 5550672  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 34589807 - 34589876
Alignment:
Q  87 cattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtc 156  Q
    |||||||||| || ||||||||  |||| || |||| | |||||||| |||||||| |||||||||||||    
T  34589807 cattttagtccttaaaattgtattggtcggtaaatttagtccctcaattttgtgaactagcaatttagtc 34589876  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 15801456 - 15801529
Alignment:
Q  76 gagtaaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaat 150  Q
    ||||||||||| ||||||||| || ||||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  15801456 gagtaaatagatattttagtctttcaaattgtaacggtcggtcaattcaatccctcaaattt-tgaaatagcaat 15801529  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 15801784 - 15801699
Alignment:
Q  75 cgagtaaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    |||||||||||||||||||||| |||||||||||| |||| ||| |||   | |||||||||||  | || ||||||| |||||||    
T  15801784 cgagtaaatagacattttagtccttgaaattgtaaaggtcggtcgattttgttcctcaaatttgcaagatcgcaattttgtccctt 15801699  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 26936779 - 26936860
Alignment:
Q  73 ttcgagtaaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtc 156  Q
    |||||||||||| ||||||||||| |||| ||| ||||||||  |  ||||| ||||| |||||||  ||||||||||| ||||    
T  26936779 ttcgagtaaataaacattttagtctttgacattttaagggtc--ttgattcagtccctgaaatttgcaaaatagcaattcagtc 26936860  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 38474888 - 38474803
Alignment:
Q  75 cgagtaaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    |||||||||| ||||||||||| |||||||||||| ||   ||||||| | ||||| ||||||| |||||||||||||||||||||    
T  38474888 cgagtaaatatacattttagtccttgaaattgtaacgggtggtcaatttagtccctaaaatttgagaaatagcaatttagtccctt 38474803  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 4557003 - 4557061
Alignment:
Q  75 cgagtaaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaa 133  Q
    ||||||||| |||||| ||||  ||||||||||||||||| ||||||| ||||||||||    
T  4557003 cgagtaaattgacattatagttcttgaaattgtaagggtcggtcaatttaatccctcaa 4557061  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 12287560 - 12287503
Alignment:
Q  101 aaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccc 158  Q
    |||||||||| ||  || |||| |||||||||||||||| ||||||||||||||||||    
T  12287560 aaattgtaagagttggttaatttaatccctcaaatttgttaaatagcaatttagtccc 12287503  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 5085820 - 5085885
Alignment:
Q  95 tcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    |||||||||||||| || |  |||||| || |||||| ||||| ||||||| ||||||||||||||    
T  5085820 tcattgaaattgtacggttgggtcaatccagtccctcgaatttatgaaatatcaatttagtccctt 5085885  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 46631260 - 46631328
Alignment:
Q  92 tagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    ||||| |||||||| |||||||| ||||||| ||||  ||||||||| ||| ||| | |||||||||||    
T  46631260 tagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtccctt 46631328  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 41513781 - 41513865
Alignment:
Q  76 gagtaaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    |||||||||| ||||||||||| |||| ||| ||||||||| ||||| | ||| |||||||||  ||||||||| ||||||||||    
T  41513781 gagtaaataggcattttagtcactgaatttgcaagggtcagccaatttagtccttcaaatttgcaaaatagcaagttagtccctt 41513865  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 8951441 - 8951368
Alignment:
Q  87 cattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    |||||||| | |||||||| |||||||| ||||||| | |||  ||||||||||||||||||| ||||||||||    
T  8951441 cattttagaccttgaaattataagggtctgtcaatttagtcctccaaatttgtgaaatagcaaattagtccctt 8951368  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 2420077 - 2420000
Alignment:
Q  79 taaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtc 156  Q
    |||||||  ||||||||| | ||||||||||   ||||| || ||| | |||||||||||||||||||||||||||||    
T  2420077 taaataggtattttagtcctagaaattgtaacaatcagttaactcagttcctcaaatttgtgaaatagcaatttagtc 2420000  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 33459162 - 33459246
Alignment:
Q  76 gagtaaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    |||||||| |||||||||||| ||||||||||||  | | || |||| | | ||||| |||| ||||||||||||| ||||||||    
T  33459162 gagtaaatcgacattttagtccttgaaattgtaacaggcggttaatttagttcctcatatttttgaaatagcaattcagtccctt 33459246  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 42510694 - 42510774
Alignment:
Q  80 aaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    |||||| |||||||||| |||||||||||| |||| ||||||| | ||| | |||| || ||||||| | |||||||||||    
T  42510694 aaataggcattttagtccttgaaattgtaaaggtcggtcaatttagtccttgaaatctgcgaaataggagtttagtccctt 42510774  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 38125450 - 38125395
Alignment:
Q  80 aaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaat 135  Q
    |||||||||||||| |  |||||||||||| |||| ||||||||||||||| ||||    
T  38125450 aaatagacattttaatatttgaaattgtaatggtcggtcaattcaatccctgaaat 38125395  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 45209490 - 45209545
Alignment:
Q  20 acttggactgtaaccacacagaaaaaggaaatgtgtgagtgtataatgttaatttc 75  Q
    ||||| ||||||||||||||  |||||||||  |||||||||||||| ||||||||    
T  45209490 acttgaactgtaaccacacatgaaaaggaaacatgtgagtgtataatattaatttc 45209545  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 41066389 - 41066422
Alignment:
Q  76 gagtaaatagacattttagtcattgaaattgtaa 109  Q
    |||||||||| |||||||||||||||||||||||    
T  41066389 gagtaaataggcattttagtcattgaaattgtaa 41066422  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 13054302 - 13054381
Alignment:
Q  76 gagtaaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagt 155  Q
    |||||||||| ||||||| || ||||||||  ||||| | ||||||| | |||||||||| |||||||||||||||||||    
T  13054302 gagtaaataggcattttattcgttgaaatttcaagggccggtcaatttagtccctcaaatatgtgaaatagcaatttagt 13054381  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 11567573 - 11567623
Alignment:
Q  87 cattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaattt 137  Q
    |||||||||| ||||||||||||||||| ||||||| | ||||||||||||    
T  11567573 cattttagtccttgaaattgtaagggtcggtcaatttagtccctcaaattt 11567623  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 37384734 - 37384789
Alignment:
Q  98 ttgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaattta 153  Q
    |||||||||||| |||||||||||| | |||||||||||||  |||| ||||||||    
T  37384734 ttgaaattgtaaaggtcagtcaatttagtccctcaaatttgcaaaattgcaattta 37384789  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 35138631 - 35138563
Alignment:
Q  92 tagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    ||||| |||||||| ||||| || ||||||| | |   ||||||||| |||||||||||||||||||||    
T  35138631 tagtccttgaaattttaaggatcggtcaatttagtatttcaaatttgcgaaatagcaatttagtccctt 35138563  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 20642336 - 20642420
Alignment:
Q  76 gagtaaatagacattttagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt 160  Q
    ||||||||  ||||| || || || ||||||||||||||| ||||||   |||||||||||||  | ||||||||| ||||||||    
T  20642336 gagtaaatcaacattctaatccttcaaattgtaagggtcaatcaatttcgtccctcaaatttgcaacatagcaattgagtccctt 20642420  T

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