View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853R-Insertion-2 (Length: 1000)
Name: NF2853R-Insertion-2
Description: NF2853R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853R-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 5e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 165 - 443
Target Start/End: Original strand, 7394334 - 7394612
Alignment:
| Q |
165 |
ctcaaaatggttctatctcatgactagaaaaagaaccctatgagatttaacaacgaagcaaaaacctatgacctccat-------tgccgaccttcttgc |
257 |
Q |
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| T |
7394334 |
ctcaaaatggttctatctcatgacca-aaaatgaaccctatgagatttaacaataaggcaaaaccctatgaactccataatccattgccgacctccatgc |
7394432 |
T |
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| Q |
258 |
cattagtgccactattgttatgcgatttgacgttcattttttccaagattatgagcagatattctcgttgccatttttgtaatgttatgctctcttattc |
357 |
Q |
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| T |
7394433 |
cactattgttaatatt---atgcgatttgacgttcattttttc-aagattatgagcagatattctcggtgccattcttgcaatgttatgctctcttatta |
7394528 |
T |
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| Q |
358 |
cggggttcatccattgcggttattccattttttgttgcatcttgtagtttgagaggatgacgatgaggaaattatttcaaattaaa |
443 |
Q |
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| T |
7394529 |
cggggatcatacattgcgcttattccattttttgttgcatcttgtagttt--gaggatgacgatggggaaattatttcaatttaaa |
7394612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 7393920 - 7393993
Alignment:
| Q |
8 |
agtaatgtagatgttgaaaatgggaagtggaggaatacttttcgtttcaccgacatccctaatccaaattgttt |
81 |
Q |
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| T |
7393920 |
agtaatatagatgttgaaaatgggaagtggaggaatacttttcgtttcaccgacgtccctaatccaaattgttt |
7393993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 817 - 887
Target Start/End: Original strand, 7395266 - 7395332
Alignment:
| Q |
817 |
aaattttaataaatggggttaatatcatatcataaaaatttacatataaataaacttgtaacgataaatat |
887 |
Q |
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| T |
7395266 |
aaattttaataaaccgagtcaataccatatcataaaaatt----tatatataaacttgtaacgataaatat |
7395332 |
T |
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