View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853R-Insertion-3 (Length: 920)
Name: NF2853R-Insertion-3
Description: NF2853R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853R-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 656; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 8 - 754
Target Start/End: Original strand, 32146868 - 32147617
Alignment:
| Q |
8 |
attaggcaaggttaaaaccaaggtatcaccatccttggttccaagttataaaatcttatcaattgttttgaaccagacatttctgcacaaaaagtattag |
107 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32146868 |
attaggcaaggttaaaaccaaggtatcaccaaccttggttccaagttataaaatctcatcaattgttttgaaccagacatttcttcacaaaaagtattag |
32146967 |
T |
|
| Q |
108 |
tgcaaagtgc---catgtccaaatgacgatcgaaattgtagcattacttgtgtaaatttgaggtatcctaagggtgtgtattgtggttggtctggtttgt |
204 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
32146968 |
tgcaaagtgctgccatgtccaaatgacgatcgaaattgtagtatcacttgtgtaaatttgaggtatcctaagggtgtgtattgcggttggtctggtctgt |
32147067 |
T |
|
| Q |
205 |
gttgttgcgagggataattgttccttctcaaaatgttgtatcaagtttatctacactgattctttatgattagtggaaaaataaataaataggtttctat |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||||||| |
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| T |
32147068 |
gttgttgcgagggataattgttccttctcaaaatgttgtatcaagtttatctacacagagtctttatgattagtggagaaataaataaattggtttctat |
32147167 |
T |
|
| Q |
305 |
tttatcatatgttttgaaccaaaaatttcttcacaaaaaagtatagtccaaagagcaactaatgctgggactactactcttagaagaaaaacatcaagca |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32147168 |
tttatcatatgttttgaaccaaaaatttcttcacaaaaaagtatagtccaaagagcaactaatgctgggactactactcttagaagaaaaacatcaagca |
32147267 |
T |
|
| Q |
405 |
aaactgacattatttgcatttgtaaggtattctttataatgatctcagcaattttgtagcaacactttatcagtcattgttaacatgaacagagaatgat |
504 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32147268 |
aaactgaaattatttgcatttgtaaggtattctttataatgatctcagcaattttgtagcaacactttatcagtcattgttaacatgaacagagaatgat |
32147367 |
T |
|
| Q |
505 |
gctcaccttgtaatttttgtgacaataaaaataataacaaagaacttaatatattatacttgaaatatcccaattttaagtttgatacgaaactagagac |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
32147368 |
gctcaccttgtaatttttgtgacaataaaaataattacaaagaacttaatatattatacttgaaatatcccaattgtaagtttgatacgaaaatagagac |
32147467 |
T |
|
| Q |
605 |
ccaacacacaataatcatacgtcttaagatgcctataaaaggatatagagtatctaaagaacttaacttattgtttctagtacataaccaaacatggcct |
704 |
Q |
| |
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||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32147468 |
ccaactcacgataatcataagtcttaagatgcctataaaaggatatagagtatctaaagagcttaacttattgtttctagtacataaccaaacatggcct |
32147567 |
T |
|
| Q |
705 |
atatattttctctacctagttcaccttcttctttgatattttcttcaatc |
754 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
32147568 |
atatattttctctacctagttcaccttcttctttgttattttcttcaatc |
32147617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 759 - 920
Target Start/End: Original strand, 32147823 - 32147978
Alignment:
| Q |
759 |
tcatatcatagataatagacgatgatatcatagaattagatccattgttcattatgatatagaaaatataaaattttatttgtatgataataaggcatgc |
858 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
32147823 |
tcatatcatagataatagacgatgatatcatagaattagatccattgttcattatgatatagaaaatataaaattttatttgtttgataataag----gc |
32147918 |
T |
|
| Q |
859 |
atacatgaaaatgatgctataaaatcacataataaacatcattctaaataatttaagcatta |
920 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
32147919 |
atacatgaaaatgatgctataaaatcacataataaacatca-tct-aataatttaagcatta |
32147978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 564 - 750
Target Start/End: Original strand, 32156256 - 32156442
Alignment:
| Q |
564 |
ttgaaatatcccaattttaagtttgatacgaaactagagacccaacacacaataatcatacgtcttaagatgcctataaaaggatatagagtatctaaag |
663 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | || ||||||| || ||||| || |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
32156256 |
ttgaaatatcccaattgtaagtttgatacgaaagtggacacccaactcaagataattttaagtctaaagatgcctataaaaggatatagagtatctaaat |
32156355 |
T |
|
| Q |
664 |
aacttaacttattgtttctagtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttgatattttcttc |
750 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| ||||||||| |
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|
| T |
32156356 |
agcttaacttattgtttctagtacataaccaaacatggcctatatattttcactccctagttcagattcttctttgacattttcttc |
32156442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 774 - 900
Target Start/End: Original strand, 32127570 - 32127692
Alignment:
| Q |
774 |
tagacgatgatatcatagaattagatccattgttcattatgatatagaaaatataaaattttatttgtatgataataaggcatgcatacatgaaaatgat |
873 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
32127570 |
tagacgatcatatcatagaattagatctattattcattatgatatagaaaatataaaattttatttgtatgataataag----gcatacatgaaaatgat |
32127665 |
T |
|
| Q |
874 |
gctataaaatcacataataaacatcat |
900 |
Q |
| |
|
|||| || |||||||||||||| |||| |
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| T |
32127666 |
gctacaagatcacataataaacgtcat |
32127692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 634 - 751
Target Start/End: Complemental strand, 2821556 - 2821439
Alignment:
| Q |
634 |
tgcctataaaaggatatagagtatctaaagaacttaacttattgtttctagtacataaccaaacatggcctatatattttctctacctagttcaccttct |
733 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2821556 |
tgcctataaaaggatatagaatatctaattagcttagcttattatttctagtacataaccaaacatggcctatatattttctctacctagttcagattct |
2821457 |
T |
|
| Q |
734 |
tctttgatattttcttca |
751 |
Q |
| |
|
|||| ||||||||||||| |
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|
| T |
2821456 |
tcttggatattttcttca |
2821439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 682 - 751
Target Start/End: Original strand, 32534143 - 32534212
Alignment:
| Q |
682 |
tagtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttgatattttcttca |
751 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32534143 |
tagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctttgatattttcttca |
32534212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 684 - 751
Target Start/End: Original strand, 32182181 - 32182248
Alignment:
| Q |
684 |
gtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttgatattttcttca |
751 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32182181 |
gtacataaccaaacataacctatatattttcactacctagttcaccttcttctttgatattttcttca |
32182248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 683 - 751
Target Start/End: Original strand, 32174151 - 32174219
Alignment:
| Q |
683 |
agtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttgatattttcttca |
751 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
32174151 |
agtacagaaccaaacatgacctatatattttctctacctagttcaccttcttctttaatgttttcttca |
32174219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 692 - 751
Target Start/End: Original strand, 32118463 - 32118522
Alignment:
| Q |
692 |
ccaaacatggcctatatattttctctacctagttcaccttcttctttgatattttcttca |
751 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
32118463 |
ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttca |
32118522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 689 - 751
Target Start/End: Original strand, 32152313 - 32152375
Alignment:
| Q |
689 |
taaccaaacatggcctatatattttctctacctagttcaccttcttctttgatattttcttca |
751 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| |||| |||||||| |||||||| |
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|
| T |
32152313 |
taaccaaacatagcctatatattttctctacatagttcatgttctcctttgataatttcttca |
32152375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 29371398 - 29371459
Alignment:
| Q |
227 |
ccttctcaaaatgttgtatcaagtttatctacactgattctttatgattagtggaaaaataa |
288 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||||| ||||| |||||||| |
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|
| T |
29371398 |
ccttctcaaaatgttggtacaagtttatctacacggagtctttatgactagtgtaaaaataa |
29371459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 32118101 - 32118141
Alignment:
| Q |
366 |
atgctgggactactactcttagaagaaaaacatcaagcaaa |
406 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32118101 |
atgctgggactactactcttgcaagaaaaacatcaagcaaa |
32118141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 772 - 885
Target Start/End: Complemental strand, 5521117 - 5521002
Alignment:
| Q |
772 |
aatagacgatgatatcatagaattagatccattgttcattatgatatagaaaatataaaattttatttgtatgataataaggcatgcat--acatgaaaa |
869 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||| | ||||||||||| | |||||||||||||||| ||||||||||||| ||| ||| |||| || |
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|
| T |
5521117 |
aatagacgatcatatcatataattcgatccataatcaattatgatatacacaatataaaattttattggtatgataataagacatacatgagaatgagaa |
5521018 |
T |
|
| Q |
870 |
tgatgctataaaatca |
885 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5521017 |
tgatgctataaaatca |
5521002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 808 - 893
Target Start/End: Complemental strand, 14453091 - 14453009
Alignment:
| Q |
808 |
cattatgatat-agaaaatataaaattttatttgtatgataataaggcatgcatacatgaaaatgatgctataaaatcacataataa |
893 |
Q |
| |
|
||||||||||| | |||||| ||||||||||| | ||||||||||| |||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
14453091 |
cattatgatatgacaaaatagaaaattttattggcatgataataag----acataaatgataatgatgctataagatcacataataa |
14453009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 42255643 - 42255712
Alignment:
| Q |
110 |
caaagtgccatgtccaaatgacgatcgaaattgtagcattacttgtgtaaatttgaggtatcctaagggtg |
180 |
Q |
| |
|
||||| |||||||||||||||||| | || |||||| ||||||| ||||||||||||||| |||||||| |
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|
| T |
42255643 |
caaagggccatgtccaaatgacgagc-aagttgtagtgttacttgcataaatttgaggtatcttaagggtg |
42255712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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