View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853R-Insertion-5 (Length: 859)
Name: NF2853R-Insertion-5
Description: NF2853R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853R-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 272 - 859
Target Start/End: Complemental strand, 44688465 - 44687877
Alignment:
| Q |
272 |
tgagttgttattattagtattatatgaactatacgaacttatattaatatgtaagttcaaaagctacatgtaactgcgtgttttttgtcctgttaagaat |
371 |
Q |
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| T |
44688465 |
tgagttgttattattagtattatatgaactatacgaacttatattaatatgtaagttcaaaagctacgtgtaactgcgtgttttttgtcctgtcgagaat |
44688366 |
T |
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| Q |
372 |
tcagatcccttgctaaattcttaatcatgggctaatcacactatggtaaactactcatttatgttagacttaatgcggattgattctttaaataatcact |
471 |
Q |
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| T |
44688365 |
tcaaatctcttgctaaattcttaattattgactaatcacactatggtaaactactcatttatgttagacttaatacgaattgattctttaaataattact |
44688266 |
T |
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| Q |
472 |
cattaataacttgcaatctttagttttttagagcgatttacatttttaatttagatcggtttgaatatgaatgttacacccc-actcttttatgttaatt |
570 |
Q |
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| T |
44688265 |
cattaataacttgcaatctttagttttttagagcgatttacatttttaatttagatcggtttgaatatcaatgttacacccccactcttttatgttaatt |
44688166 |
T |
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| Q |
571 |
agtattagtactatgatatcaacatgttacaccctcactcttttattttagttagtactataaaacaaacgagatattttaaaacaaacttcaaattgga |
670 |
Q |
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| T |
44688165 |
agtattagtactatgatatcaacatgttacaccctcactcttttattttagttagtactataaaacaaacgagatattttaaaacaaacttcaaattgga |
44688066 |
T |
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| Q |
671 |
agtgtaccagcacttgtattggtcaaattttaatgcaaaattaagatatttacttcacttatcctaggttatcctaggtattgtagtttttgcgggtata |
770 |
Q |
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| T |
44688065 |
agtgtaccagcacttgtattggtcaaattttaatgcaaaattaagatatttacttcacttatcctaggttatcctaggtattgtagtttttgcgggtata |
44687966 |
T |
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| Q |
771 |
aatcctttgcccattttgatcattccttacgagctctgcctcatagacacgtttgacattattggatggattagtgggcccatgccatg |
859 |
Q |
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| T |
44687965 |
aatcctttgcccattttgatcattcctttcgagctctgcctcatagacacgtttgacattattggatggattagtgggcccatgccatg |
44687877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 44688689 - 44688479
Alignment:
| Q |
9 |
tatatatggcggcattagatcatgaaaatacaaatttcatgattaagacatatgagagaattaatggatacctcctcccactctatttggatttggtgca |
108 |
Q |
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| T |
44688689 |
tatatatggcggcattagatcatgaaaatacaaatttcatgattaagacatatgagagaattaatggatacctcctcccactctatttggatttggtgca |
44688590 |
T |
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| Q |
109 |
taatttaagtcatgtagttttcaatcccaaccatctaatcttaacttaatggttgatacgactattttaannnnnnnngttagtagttggactcacacgt |
208 |
Q |
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| T |
44688589 |
taatttaagtcatgtagttttcaatcccaaccatctaatcttaacttaatggttggtacgactattttaattttttttgttagtagttggattcacacat |
44688490 |
T |
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| Q |
209 |
cttaaaggtag |
219 |
Q |
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|||||| |||| |
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| T |
44688489 |
cttaaaagtag |
44688479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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