View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853R-Insertion-8 (Length: 618)

Name: NF2853R-Insertion-8
Description: NF2853R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853R-Insertion-8
NF2853R-Insertion-8
[»] chr2 (18 HSPs)
chr2 (338-618)||(18612055-18612335)
chr2 (9-158)||(18612450-18612598)
chr2 (392-466)||(29490838-29490912)
chr2 (499-599)||(29758218-29758317)
chr2 (224-267)||(18612339-18612382)
chr2 (228-293)||(32217032-32217097)
chr2 (229-288)||(35314206-35314265)
chr2 (229-286)||(33228312-33228369)
chr2 (229-293)||(32226335-32226399)
chr2 (499-582)||(8759115-8759197)
chr2 (224-275)||(38799448-38799499)
chr2 (229-275)||(39907740-39907786)
chr2 (254-286)||(740479-740511)
chr2 (254-286)||(741165-741197)
chr2 (237-293)||(25083526-25083582)
chr2 (254-286)||(27262980-27263012)
chr2 (229-293)||(27649313-27649376)
chr2 (254-286)||(38502382-38502414)
[»] chr4 (11 HSPs)
chr4 (393-618)||(56074661-56074893)
chr4 (499-599)||(7040459-7040558)
chr4 (520-602)||(52545134-52545215)
chr4 (499-599)||(18656206-18656305)
chr4 (499-591)||(23564717-23564808)
chr4 (231-291)||(28703936-28703996)
chr4 (254-286)||(36645006-36645038)
chr4 (257-286)||(28510017-28510046)
chr4 (229-286)||(29718477-29718534)
chr4 (229-293)||(11159948-11160012)
chr4 (254-286)||(23202779-23202811)
[»] chr7 (23 HSPs)
chr7 (461-596)||(25471808-25471942)
chr7 (499-591)||(20046537-20046629)
chr7 (520-599)||(28014307-28014386)
chr7 (233-286)||(20266950-20267003)
chr7 (499-596)||(44963261-44963357)
chr7 (237-285)||(20245119-20245167)
chr7 (237-285)||(20249157-20249205)
chr7 (229-286)||(10039864-10039921)
chr7 (245-293)||(32675728-32675776)
chr7 (254-286)||(33229350-33229382)
chr7 (254-286)||(35087537-35087569)
chr7 (254-286)||(37374587-37374619)
chr7 (229-293)||(38321394-38321458)
chr7 (229-281)||(39990717-39990769)
chr7 (254-286)||(47809958-47809990)
chr7 (236-284)||(8721431-8721479)
chr7 (229-293)||(10039291-10039355)
chr7 (242-282)||(20233122-20233162)
chr7 (242-286)||(20233810-20233854)
chr7 (233-285)||(20265679-20265731)
chr7 (229-280)||(32806671-32806723)
chr7 (229-285)||(39599215-39599271)
chr7 (229-286)||(39959482-39959535)
[»] scaffold0057 (1 HSPs)
scaffold0057 (499-602)||(58884-58985)
[»] scaffold0006 (1 HSPs)
scaffold0006 (520-602)||(39262-39344)
[»] chr5 (18 HSPs)
chr5 (393-539)||(30639452-30639601)
chr5 (229-288)||(34303685-34303744)
chr5 (232-293)||(16995578-16995637)
chr5 (525-615)||(20012941-20013030)
chr5 (520-574)||(25076174-25076228)
chr5 (520-574)||(25134143-25134197)
chr5 (237-286)||(41371056-41371105)
chr5 (229-293)||(16202479-16202543)
chr5 (232-284)||(24090556-24090608)
chr5 (229-285)||(27909366-27909422)
chr5 (254-286)||(37380116-37380148)
chr5 (254-293)||(39938050-39938089)
chr5 (236-293)||(9079619-9079677)
chr5 (257-286)||(12199001-12199030)
chr5 (240-293)||(16273041-16273094)
chr5 (229-293)||(34299762-34299827)
chr5 (229-293)||(17018544-17018608)
chr5 (254-286)||(33857931-33857963)
[»] chr6 (14 HSPs)
chr6 (499-599)||(5376976-5377075)
chr6 (499-599)||(5378831-5378930)
chr6 (394-503)||(3637729-3637846)
chr6 (520-590)||(20985851-20985921)
chr6 (503-553)||(15149118-15149167)
chr6 (499-597)||(19645336-19645433)
chr6 (499-599)||(1088687-1088786)
chr6 (254-286)||(17915970-17916002)
chr6 (229-273)||(32938970-32939014)
chr6 (232-271)||(100881-100920)
chr6 (520-599)||(8915586-8915665)
chr6 (520-602)||(30488554-30488635)
chr6 (248-293)||(4577915-4577960)
chr6 (232-293)||(32570282-32570343)
[»] chr3 (12 HSPs)
chr3 (499-599)||(17402816-17402915)
chr3 (393-491)||(21427769-21427875)
chr3 (499-599)||(1140099-1140198)
chr3 (235-291)||(35963896-35963952)
chr3 (229-286)||(1148877-1148934)
chr3 (229-293)||(47415876-47415940)
chr3 (228-292)||(5349004-5349068)
chr3 (230-286)||(30268378-30268433)
chr3 (229-293)||(35258790-35258854)
chr3 (254-286)||(39199037-39199069)
chr3 (246-286)||(42097223-42097263)
chr3 (254-286)||(47411187-47411219)
[»] chr8 (18 HSPs)
chr8 (520-602)||(31032035-31032116)
chr8 (499-599)||(30224328-30224427)
chr8 (499-610)||(3379138-3379247)
chr8 (499-599)||(5567524-5567623)
chr8 (229-293)||(6227615-6227679)
chr8 (524-602)||(19473654-19473731)
chr8 (524-602)||(19544579-19544656)
chr8 (524-602)||(19588040-19588117)
chr8 (229-293)||(6235372-6235436)
chr8 (499-599)||(25249104-25249203)
chr8 (230-280)||(13219242-13219292)
chr8 (229-293)||(18887313-18887377)
chr8 (254-286)||(21553525-21553557)
chr8 (229-287)||(41372634-41372692)
chr8 (256-293)||(15147690-15147727)
chr8 (232-293)||(16338108-16338169)
chr8 (229-293)||(44607559-44607623)
chr8 (254-286)||(45521628-45521660)
[»] chr1 (17 HSPs)
chr1 (224-293)||(42470307-42470375)
chr1 (520-618)||(9487459-9487554)
chr1 (229-289)||(10382276-10382336)
chr1 (499-599)||(17449409-17449507)
chr1 (254-286)||(20170821-20170853)
chr1 (254-286)||(32823951-32823983)
chr1 (254-286)||(47511901-47511933)
chr1 (499-599)||(48941698-48941801)
chr1 (254-293)||(40368158-40368197)
chr1 (520-602)||(5924817-5924898)
chr1 (229-283)||(27506659-27506713)
chr1 (229-275)||(37140323-37140369)
chr1 (232-286)||(39275724-39275778)
chr1 (229-287)||(41103563-41103621)
chr1 (261-293)||(16418049-16418081)
chr1 (257-293)||(25704327-25704363)
chr1 (254-286)||(51760512-51760544)
[»] scaffold0007 (1 HSPs)
scaffold0007 (254-286)||(28396-28428)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 338 - 618
Target Start/End: Complemental strand, 18612335 - 18612055
Alignment:
Q  338 gcagaacgctagtaaatataagagaaatattatgtggacgtaaaaattatgtctaatattacagtatattgaataaactagagttagatcgtaggttaac 437  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  18612335 gcagaacgctagtaaatataagagaaatattatgaggacgtaaaaatgatgtctaatattacagtatattgaataaactatagttagatgataggttaac 18612236  T
Q  438 tagagttaccaagttggttaagtagttagttactccaactcactcctataaatacttcactctattgtactcaatcattatacttttatcaatctattca 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18612235 tagagttaccaagttggttaagtagttagttactccaactcactcctataaatacttcactctattgtactcaatcattatacttttatcaatctattca 18612136  T
Q  538 tttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgatgattatgaccttcttc 618  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  18612135 tttctataatgagtttttgtaaatatctcccacatgagtactcttatgcttgctttcttgctgatgattatgaccttcttc 18612055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 18612598 - 18612450
Alignment:
Q  9 gtaatcacaatt-acaagcaaatcaataatcagtcaatcatgatctatacatctatattttatttaaatgaaatacatggttttaaagtgaccttttgat 107  Q
    |||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18612598 gtaatcacaattgacaaccaaatcaataatcagtcaatcat---ctatacatctatattttatttaaatgaaatacatggttttaaagtgaccttttgat 18612502  T
Q  108 tttcaattatactctaaaataaatttatctacaaaattg-tagaatgtcgat 158  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18612501 tttcaattatactctaaaataaatttatctacaaaattgttagaatgtcgat 18612450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 392 - 466
Target Start/End: Complemental strand, 29490912 - 29490838
Alignment:
Q  392 aatattacagtatattgaataaactagagttagatcgtaggttaactagagttaccaagttggttaagtagttag 466  Q
    |||||||||||||| ||||||||||| ||||||||  |||||||| ||||||||| |||||||||| ||||||||    
T  29490912 aatattacagtataatgaataaactaaagttagatgataggttaattagagttacgaagttggttaggtagttag 29490838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 29758218 - 29758317
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||  | | | |||||| | ||||| |||||||| ||||||| ||||||    
T  29758218 ctattgtactcattcattat-cttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgc 29758316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 224 - 267
Target Start/End: Complemental strand, 18612382 - 18612339
Alignment:
Q  224 tatagttgttacaatataaaagtgcaaaagatctatacctataa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18612382 tatagttgttacaatataaaagtgcaaaagatctatacctataa 18612339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 32217097 - 32217032
Alignment:
Q  228 gttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||||||||| ||||||||||| |  ||||| ||||||||||||| ||||||||||| |||||    
T  32217097 gttgttacaatatgaaagtgcaaaataattatacttataattttaatcaaaatcaaaattgcataa 32217032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 35314206 - 35314265
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaattt 288  Q
    |||||||||||| ||||||||||| || ||||| || |||||||||| ||||||||||||    
T  35314206 ttgttacaatatgaaagtgcaaaatatatatacataaaattttaatccaaatcaaaattt 35314265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 33228312 - 33228369
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    |||||||| ||||||||| ||||| || |||||||||||||||| || ||||||||||    
T  33228312 ttgttacagtataaaagtacaaaatatgtatacctataattttagtcaaaatcaaaat 33228369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 32226399 - 32226335
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||||| ||||||||||| |  ||||| | ||||||||||| ||||||||||| |||||    
T  32226399 ttgttacaatatgaaagtgcaaaataattatacttctaattttaatcaaaatcaaaattgcataa 32226335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 582
Target Start/End: Complemental strand, 8759197 - 8759115
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactctt 582  Q
    |||||||||||| |||| || ||||||||||||| |||||||||| ||||||||| | | | |||||| | ||||| |||||||    
T  8759197 ctattgtactcattcatcat-cttttatcaatctgttcatttctacaatgagtttctttgagtatctccctcatgagtactctt 8759115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 38799448 - 38799499
Alignment:
Q  224 tatagttgttacaatataaaagtgcaaaagatctatacctataattttaatc 275  Q
    |||| |||||||||||||||||||||||| || |||||| |||| |||||||    
T  38799448 tatatttgttacaatataaaagtgcaaaatatatataccaataactttaatc 38799499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 39907786 - 39907740
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatc 275  Q
    ||||| |||||| ||| ||||||| ||||||||||||||||||||||    
T  39907786 ttgttgcaatatgaaaatgcaaaatatctatacctataattttaatc 39907740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 740511 - 740479
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||| ||||||||||    
T  740511 atctatacctataattttaatcaaaatcaaaat 740479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 741197 - 741165
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||| ||||||||||    
T  741197 atctatacctataattttaatcaaaatcaaaat 741165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 25083582 - 25083526
Alignment:
Q  237 atataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||| ||||| ||||| || |||||||||||||||| || |||| ||||||||||||    
T  25083582 atatgaaagtacaaaatatttatacctataattttattcaaaattaaaatttcataa 25083526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 27262980 - 27263012
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    ||||||||| |||||||||||||||||||||||    
T  27262980 atctataccaataattttaatctaaatcaaaat 27263012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 27649313 - 27649376
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||||| ||| ||||||| |||||||  ||||||||||||| ||||| | |||||||||    
T  27649313 ttgttacaatatgaaa-tgcaaaatatctataattataattttaatcgaaatctatatttcataa 27649376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 38502382 - 38502414
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||| ||||||||||    
T  38502382 atctatacctataattttaatcaaaatcaaaat 38502414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 393 - 618
Target Start/End: Complemental strand, 56074893 - 56074661
Alignment:
Q  393 atattacagtatattgaataaactagagttagatcgtaggttaactagagttaccaagttggttaagtagttag--------ttactccaactcactcct 484  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||        ||||||||||||||||||    
T  56074893 atattacagtatattgaataaactagagttagatgataggttaactagagttaccaagttagttaggtagttagggagttagttactccaactcactcct 56074794  T
Q  485 ataaatacttcactctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttag 584  Q
    ||||||||||||||||| |||| | |||||| || ||||||||| ||||||||||||||||| |||||| | | | |||||| ||||||| ||||||||     
T  56074793 ataaatacttcactctagtgtattaaatcatcat-cttttatcattctattcatttctataacgagtttctatgagtatctcccacatgagtactcttat 56074695  T
Q  585 gcttgctttcttgctgatgattatgaccttcttc 618  Q
    |||||||||||||||||| |||||||||||||||    
T  56074694 gcttgctttcttgctgatcattatgaccttcttc 56074661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 7040459 - 7040558
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||  | | | |||||| | ||||| |||||||| ||||||| ||||||    
T  7040459 ctattgtactcattcattat-cttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgc 7040557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 520 - 602
Target Start/End: Complemental strand, 52545215 - 52545134
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgat 602  Q
    |||||||||||||||||||| ||||||||||||| | | | |||||| ||||||| |||||||| ||| ||||||||||||||    
T  52545215 cttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgctcgctttcttgctgat 52545134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 18656206 - 18656305
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| |||| || |||||||||||||||||||||||| ||||||||  | | | |||||| | ||||| |||||||| ||||||| ||||||    
T  18656206 ctattgtactcattcatcat-cttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgc 18656304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 499 - 591
Target Start/End: Complemental strand, 23564808 - 23564717
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgct 591  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||  | | | |||||| | ||||| |||||||| |||||||    
T  23564808 ctattgtactcattcattat-cttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgct 23564717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 28703996 - 28703936
Alignment:
Q  231 gttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcat 291  Q
    |||||||||| ||| ||||||| |||||||| |||| |||||||| |||||||||||||||    
T  28703996 gttacaatatgaaaatgcaaaatatctatacatatatttttaatcaaaatcaaaatttcat 28703936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 36645006 - 36645038
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  36645006 atctatacctataattttaatctaaatcaaaat 36645038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 28510017 - 28510046
Alignment:
Q  257 tatacctataattttaatctaaatcaaaat 286  Q
    ||||||||||||||||||||||||||||||    
T  28510017 tatacctataattttaatctaaatcaaaat 28510046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 29718477 - 29718534
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||| || |||| || |||||||||| |||||||  ||||||||||    
T  29718477 ttgttacaatataaaaatgaaaaatatatatacctatatttttaattaaaatcaaaat 29718534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 11159948 - 11160012
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||| |||| |||||| |||| || | ||||||||||||||||| |||| ||||||| ||||    
T  11159948 ttgttacgatattaaagtgaaaaatatttgtacctataattttaatcaaaattaaaattttataa 11160012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 23202811 - 23202779
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    ||||||||| |||||||||||||||||||||||    
T  23202811 atctataccaataattttaatctaaatcaaaat 23202779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 461 - 596
Target Start/End: Complemental strand, 25471942 - 25471808
Alignment:
Q  461 agttagttactccaactcactcctataaatacttcactctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaa 560  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| || |||   ||||||||||||||||||||| |||||||||||| | | |     
T  25471942 agttagttactccaagtcactcctataaatacctcactctattgtactc-attattcatcttttatcaatctattcatttatataatgagtttctattag 25471844  T
Q  561 tatctctcacatgattactcttaggcttgctttctt 596  Q
    |||||| ||| ||| || ||||| ||||||| ||||    
T  25471843 tatctcccacgtgaataatcttatgcttgctatctt 25471808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 499 - 591
Target Start/End: Complemental strand, 20046629 - 20046537
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgct 591  Q
    |||||||||||| ||| |||  ||||||||||||||||||||||| ||||||||| | | | |||||| ||||||| |||||||| |||||||    
T  20046629 ctattgtactcattcaatatctttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgct 20046537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 520 - 599
Target Start/End: Complemental strand, 28014386 - 28014307
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgct 599  Q
    |||||||||||||||||||||||| ||||||||| | | | |||||| |||||||  ||||||| ||||||| |||||||    
T  28014386 cttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagcactcttatgcttgctatcttgct 28014307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 20266950 - 20267003
Alignment:
Q  233 tacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||||||||||    
T  20266950 tacaatatgaaagtgcaatatatctatacctataattttaatcaaaatcaaaat 20267003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 596
Target Start/End: Original strand, 44963261 - 44963357
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttctt 596  Q
    |||||||||||| |||| || |||||||||||||||||||||||| ||||| ||| | | | |||||| | ||||| |||||||| ||||||| ||||    
T  44963261 ctattgtactcattcatcat-cttttatcaatctattcatttctacaatgaatttctttgagtatctccctcatgaatactcttatgcttgctatctt 44963357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 20245119 - 20245167
Alignment:
Q  237 atataaaagtgcaaaagatctatacctataattttaatctaaatcaaaa 285  Q
    |||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  20245119 atatgaaagtgcaaaatatctatacctataattttaatcaaaatcaaaa 20245167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 20249157 - 20249205
Alignment:
Q  237 atataaaagtgcaaaagatctatacctataattttaatctaaatcaaaa 285  Q
    |||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  20249157 atatgaaagtgcaaaatatctatacctataattttaatcaaaatcaaaa 20249205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 10039921 - 10039864
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||| ||| ||||||| || ||||||||||||||||| | ||||||||||    
T  10039921 ttgttacaatatgaaattgcaaaatatgtatacctataattttaaccaaaatcaaaat 10039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 32675728 - 32675776
Alignment:
Q  245 gtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||| |||||||| ||||||||||||| |||||||||||| ||||    
T  32675728 gtgcaaaatatctatacatataattttaatcaaaatcaaaattttataa 32675776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 33229382 - 33229350
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  33229382 atctatacctataattttaatctaaatcaaaat 33229350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 35087537 - 35087569
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  35087537 atctatacctataattttaatctaaatcaaaat 35087569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 37374619 - 37374587
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  37374619 atctatacctataattttaatctaaatcaaaat 37374587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 38321394 - 38321458
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||||||||| |  |||| || |||| |||||||||||||  |||||||||||||||||    
T  38321394 ttgttacaatataaaaatctaaaatatttatatctataattttaataaaaatcaaaatttcataa 38321458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 39990769 - 39990717
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatc 281  Q
    |||||||||||||||||||||||| || ||  ||||||||||||||| |||||    
T  39990769 ttgttacaatataaaagtgcaaaatatataagcctataattttaatcaaaatc 39990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 47809990 - 47809958
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  47809990 atctatacctataattttaatctaaatcaaaat 47809958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 8721479 - 8721431
Alignment:
Q  236 aatataaaagtgcaaaagatctatacctataattttaatctaaatcaaa 284  Q
    ||||| ||||||||||| ||| ||||||| |||||||||| ||||||||    
T  8721479 aatatgaaagtgcaaaatatcaatacctagaattttaatcaaaatcaaa 8721431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 10039355 - 10039291
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||||| ||| | ||||| |||||||  ||||||||||||| |||| ||||||| ||||    
T  10039355 ttgttacaatatgaaaatccaaaatatctatagttataattttaatcaaaattaaaattttataa 10039291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 20233162 - 20233122
Alignment:
Q  242 aaagtgcaaaagatctatacctataattttaatctaaatca 282  Q
    ||||||||||| || ||||||||||||||||||| ||||||    
T  20233162 aaagtgcaaaatatttatacctataattttaatcaaaatca 20233122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 20233810 - 20233854
Alignment:
Q  242 aaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||||    
T  20233810 aaagtgtaaaatatctatacctacaattttaatcaaaatcaaaat 20233854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 20265679 - 20265731
Alignment:
Q  233 tacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaa 285  Q
    |||||||| ||||||||||| |||||||| |||| |||||||| |||| ||||    
T  20265679 tacaatatgaaagtgcaaaatatctatacttatacttttaatcaaaatgaaaa 20265731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 32806671 - 32806723
Alignment:
Q  229 ttgttacaatat-aaaagtgcaaaagatctatacctataattttaatctaaat 280  Q
    |||||||||||| |||||||||||| || ||||||||| ||||||||| ||||    
T  32806671 ttgttacaatatgaaaagtgcaaaatatatatacctattattttaatcaaaat 32806723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 39599215 - 39599271
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaa 285  Q
    |||||||||||| ||| ||||||| |||||||  |||||||| |||| |||||||||    
T  39599215 ttgttacaatatgaaattgcaaaatatctataattataatttgaatcaaaatcaaaa 39599271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 39959482 - 39959535
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    ||||||||||||||||||| |||| ||||||||    |||||||||| ||||||||||    
T  39959482 ttgttacaatataaaagtgtaaaatatctatac----aattttaatcaaaatcaaaat 39959535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 499 - 602
Target Start/End: Original strand, 58884 - 58985
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| |||| || |||||||||||||||||||| ||||||||||||| | | | |||||| ||||||| |||||||| ||||||||||||||    
T  58884 ctattgtactcattcatcat-cttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgc 58981  T
Q  599 tgat 602  Q
    ||||    
T  58982 tgat 58985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 520 - 602
Target Start/End: Original strand, 39262 - 39344
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgat 602  Q
    |||||||||||||||||||||||||||||||||||| | | |||||| ||||||| ||||||||   ||||||||||||||||    
T  39262 cttttatcaatctattcatttctataatgagtttttatgagtatctcccacatgagtactcttaattttgctttcttgctgat 39344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 393 - 539
Target Start/End: Original strand, 30639452 - 30639601
Alignment:
Q  393 atattacagtatattgaataaactagagttagatcgtaggttaactagagttaccaagttggttaagt--------agttagttactccaactcactcct 484  Q
    ||||||||||||| |||| |||||||||||||||  ||||||||||||||||| ||||||||||| ||        |||||||||||||||||||||||     
T  30639452 atattacagtatagtgaaaaaactagagttagatgataggttaactagagttaacaagttggttaggtaattagggagttagttactccaactcactccc 30639551  T
Q  485 ataaatacttcactctattgtactcaatcattatacttttatcaatctattcatt 539  Q
    ||| |||  ||||||| ||||| ||| ||      ||||||||||||||||||||    
T  30639552 atatataactcactctgttgtattcattc-----tcttttatcaatctattcatt 30639601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 34303685 - 34303744
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaattt 288  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||| | ||| ||||||||    
T  34303685 ttgttacaatatgaaaatgcaaaatatctatacctataattttaagcaaaaccaaaattt 34303744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 16995578 - 16995637
Alignment:
Q  232 ttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||  |||||||||| ||  |||||||||||||||||| |||||||||||||||||    
T  16995578 ttacaatatgtaagtgcaaaatat--atacctataattttaatcaaaatcaaaatttcataa 16995637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 525 - 615
Target Start/End: Complemental strand, 20013030 - 20012941
Alignment:
Q  525 atcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgatgattatgaccttc 615  Q
    ||||||| ||||||| ||||||||||||| | | | |||||| ||||||| |||||||| ||||||||||||| |||| | ||||| ||||    
T  20013030 atcaatcaattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttggtgatcactatgatcttc 20012941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 574
Target Start/End: Complemental strand, 25076228 - 25076174
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatga 574  Q
    ||||||||||| |||||||||||||||||||||| | | |||||||||| |||||    
T  25076228 cttttatcaatatattcatttctataatgagtttctatgaatatctctctcatga 25076174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 574
Target Start/End: Complemental strand, 25134197 - 25134143
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatga 574  Q
    ||||||||||| |||||||||||||||||||||| | | |||||||||| |||||    
T  25134197 cttttatcaatatattcatttctataatgagtttctatgaatatctctctcatga 25134143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 41371056 - 41371105
Alignment:
Q  237 atataaaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    |||| ||||||||||| |||||||||||||||||||||  ||||||||||    
T  41371056 atatgaaagtgcaaaatatctatacctataattttaattaaaatcaaaat 41371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 16202479 - 16202543
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||||| || ||||||||| | | |||||| |||| |||||||| |||||||||||||||||    
T  16202479 ttgttacaacatgaaagtgcaatatacctatacttatagttttaatcaaaatcaaaatttcataa 16202543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 24090608 - 24090556
Alignment:
Q  232 ttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaa 284  Q
    ||||||||| |||||||||||  | ||||||||||||||||||| ||||||||    
T  24090608 ttacaatatgaaagtgcaaaacttttatacctataattttaatcaaaatcaaa 24090556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 27909422 - 27909366
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaa 285  Q
    |||||||||| |||||||| |||| || |||| |||||||||||||| |||||||||    
T  27909422 ttgttacaatttaaaagtgtaaaatatttatatctataattttaatcaaaatcaaaa 27909366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 37380148 - 37380116
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  37380148 atctatacctataattttaatctaaatcaaaat 37380116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 39938050 - 39938089
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  39938050 atctatacatataattttaatcaaaatcaaaatttcataa 39938089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 9079619 - 9079677
Alignment:
Q  236 aatataaaagtgcaaaagatctatacctataatttt-aatctaaatcaaaatttcataa 293  Q
    ||||||||| | ||||| || ||||| ||||||||| ||||||||||||||||||||||    
T  9079619 aatataaaaatacaaaatatttatacatataatttttaatctaaatcaaaatttcataa 9079677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 12199001 - 12199030
Alignment:
Q  257 tatacctataattttaatctaaatcaaaat 286  Q
    ||||||||||||||||||||||||||||||    
T  12199001 tatacctataattttaatctaaatcaaaat 12199030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 16273094 - 16273041
Alignment:
Q  240 taaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||  |||| |||||| | ||||||||||||| |||||||||||||||||    
T  16273094 taaaagtcaaaaatatctatgcatataattttaatcaaaatcaaaatttcataa 16273041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 34299762 - 34299827
Alignment:
Q  229 ttgttacaatataaaagtgcaaaag-atctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||| ||||||||||||||||||  || ||||||||||||||||||| |||  |||| |||||||    
T  34299762 ttgttgcaatataaaagtgcaaaaatatatatacctataattttaatcaaaactaaaaattcataa 34299827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 17018544 - 17018608
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||||| ||||| ||||| || | || |||||||||||||| ||| || ||||||||||    
T  17018544 ttgttacaatatgaaagtacaaaatatatctatctataattttaatcaaaaccagaatttcataa 17018608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 33857931 - 33857963
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||| ||||||||||    
T  33857931 atctatacctataattttaatcaaaatcaaaat 33857963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 5376976 - 5377075
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||| | | | |||||| ||||||| |||||||| ||||||| ||||||    
T  5376976 ctattgtactcattcaatat-cttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgc 5377074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 5378831 - 5378930
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||| | | | |||||| ||||||| |||||||| ||||||| ||||||    
T  5378831 ctattgtactcattcaatat-cttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgc 5378929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 394 - 503
Target Start/End: Original strand, 3637729 - 3637846
Alignment:
Q  394 tattacagtatattgaataaactagagttagatcgtaggttaactagagttaccaagttggtta---agt-----agttagttactccaactcactccta 485  Q
    |||| ||||||| ||||||||||| ||||||||  ||||||||||| |||||| ||||||||||   |||     |||||  ||||||||||||||||||    
T  3637729 tatttcagtatagtgaataaactaaagttagataataggttaactaaagttacaaagttggttagatagttatgaagttaactactccaactcactccta 3637828  T
Q  486 taaatacttcactctatt 503  Q
    ||||||| ||||||||||    
T  3637829 taaatacctcactctatt 3637846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 520 - 590
Target Start/End: Complemental strand, 20985921 - 20985851
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgc 590  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||||  ||||||| |||||||| ||||||    
T  20985921 cttttatcaatctattcatttctataatgaatttttataagtatctaccacatgagtactcttatgcttgc 20985851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 553
Target Start/End: Complemental strand, 15149167 - 15149118
Alignment:
Q  503 tgtactcaatcattatacttttatcaatctattcatttctataatgagttt 553  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  15149167 tgtactcattcattat-cttttatcaatctattcatttctacaatgagttt 15149118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 597
Target Start/End: Complemental strand, 19645433 - 19645336
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttg 597  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||| ||||| ||| | | | |||||| | ||||| ||||||||  |||||| |||||    
T  19645433 ctattgtactcattcattat-cttttatcaatctatttatttctacaatgaatttctttgagtatctccctcatgagtactcttatacttgctatcttg 19645336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 499 - 599
Target Start/End: Complemental strand, 1088786 - 1088687
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagttt-ttgtaaatatctctcacatgattactcttaggcttgctttcttg 597  Q
    |||||||||||| |||| || |||||||||||||||||| ||||||||||||||| || | | |||||| || |||| |||||||| | ||||| |||||    
T  1088786 ctattgtactcattcatcat-cttttatcaatctattca-ttctataatgagtttcttttgagtatctcccatatgagtactcttatgtttgctatcttg 1088689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 17915970 - 17916002
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  17915970 atctatacctataattttaatctaaatcaaaat 17916002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 32938970 - 32939014
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaa 273  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||    
T  32938970 ttgttacaatataaaattgcaaaatatctatatctataattttaa 32939014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 100881 - 100920
Alignment:
Q  232 ttacaatataaaagtgcaaaagatctatacctataatttt 271  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  100881 ttacaatataaaagtgcaaaatatatatacctataatttt 100920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 599
Target Start/End: Original strand, 8915586 - 8915665
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgct 599  Q
    ||||||| |||||||||||||||||||| ||||| | | | |||||  |||| || |||||||| ||||||| |||||||    
T  8915586 cttttattaatctattcatttctataataagtttctatgagtatcttccacacgagtactcttatgcttgctctcttgct 8915665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 602
Target Start/End: Original strand, 30488554 - 30488635
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgat 602  Q
    |||||||||||||||||| ||||||||||||||||| |   |||||  ||||||| || | ||| |||| |||||||||||||    
T  30488554 cttttatcaatctattca-ttctataatgagtttttatcggtatcttccacatgagtatttttatgcttactttcttgctgat 30488635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 4577960 - 4577915
Alignment:
Q  248 caaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||| ||||||| |||||||||||||| |||| ||||||||||||    
T  4577960 caaaatatctatatctataattttaatcaaaattaaaatttcataa 4577915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 32570343 - 32570282
Alignment:
Q  232 ttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||||| |||||||| || ||  || | | |||||||||||||||||||||||||||||    
T  32570343 ttacaatatcaaagtgcagaacatacattcgtttaattttaatctaaatcaaaatttcataa 32570282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 499 - 599
Target Start/End: Complemental strand, 17402915 - 17402816
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||| | | | |||||| ||||||| |||||||| ||||||| ||||||    
T  17402915 ctattgtactcattcaatat-cttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgc 17402817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 393 - 491
Target Start/End: Original strand, 21427769 - 21427875
Alignment:
Q  393 atattacagtatattgaataaactagagttagatcgtaggttaactagagttaccaagttggtta---agt-----agttagttactccaactcactcct 484  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||| |||||| |||||||   |||     |||||||||||||||||||||||     
T  21427769 atattacagtatagtgaataaactagagttagatgataggttaactagagctaccaatttggttaggcagttagggagttagttactccaactcactccc 21427868  T
Q  485 ataaata 491  Q
    |||||||    
T  21427869 ataaata 21427875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 1140099 - 1140198
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| |||| || |||||||||||||||||||||||| ||||||||  | | | |||||| | ||||| |||||||| ||||||| ||||||    
T  1140099 ctattgtactcattcatcat-cttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgc 1140197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 35963896 - 35963952
Alignment:
Q  235 caatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcat 291  Q
    |||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||    
T  35963896 caatataaaagtgcaaaatatctatagctataatattaatcaaaatcaaaatttcat 35963952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 1148877 - 1148934
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    |||| ||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||    
T  1148877 ttgtcacaatatcaaagtgcaaaatatctatacttataattttaatcaaaatcaaaat 1148934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 47415940 - 47415876
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||  | |||||| |||| ||||||| |||||||||||||| |||| ||||||||||||    
T  47415940 ttgttacaaatttaaagtgtaaaatatctatatctataattttaatcaaaattaaaatttcataa 47415876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 5349004 - 5349068
Alignment:
Q  228 gttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcata 292  Q
    ||||||||||| |||||||  |||| ||| |||| || |||||||||| ||||||||||| ||||    
T  5349004 gttgttacaatttaaaagtcaaaaatatcaatacttaaaattttaatcaaaatcaaaattacata 5349068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 30268378 - 30268433
Alignment:
Q  230 tgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    ||||| ||||| |||||| |||| ||||||||||| |||||||||| ||||||||||    
T  30268378 tgttataatatgaaagtg-aaaatatctatacctacaattttaatcaaaatcaaaat 30268433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 35258854 - 35258790
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||| || |||||||   ||| |||||||| ||||||||||||  |||||||||||||||||    
T  35258854 ttgttactatttaaaagtcacaaacatctatacatataattttaataaaaatcaaaatttcataa 35258790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 39199069 - 39199037
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||| ||||||||||    
T  39199069 atctatacctataattttaatcaaaatcaaaat 39199037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 42097263 - 42097223
Alignment:
Q  246 tgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    ||||||| |||||||||| ||||||||||| ||||||||||    
T  42097263 tgcaaaatatctatacctctaattttaatcaaaatcaaaat 42097223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 47411187 - 47411219
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||| ||||||||||    
T  47411187 atctatacctataattttaatcaaaatcaaaat 47411219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 520 - 602
Target Start/End: Complemental strand, 31032116 - 31032035
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgat 602  Q
    |||||||||||||||||||| ||||||||||||| | | | |||||| ||||||| |||||||| ||||||||||||||||||    
T  31032116 cttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgctgat 31032035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 30224328 - 30224427
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||  | | | |||||| | ||||| |||||||| ||||||| ||||||    
T  30224328 ctattgtactcattcattat-cttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgc 30224426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 499 - 610
Target Start/End: Complemental strand, 3379247 - 3379138
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| |||| ||  ||||||||||||||||||| ||||||||||||| | | | |||||| ||||||| |||| |||  |||||||||||||    
T  3379247 ctattgtactcattcatcatt-ttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtacttttatacttgctttcttgc 3379150  T
Q  599 tgatgattatga 610  Q
    |||| |||||||    
T  3379149 tgatcattatga 3379138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 5567524 - 5567623
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| |||| || |||||||||||||||||||||||| ||||||||  | | | |||||| | ||||| |||||||| ||||||| ||||||    
T  5567524 ctattgtactcattcatcat-cttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgc 5567622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 6227679 - 6227615
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||||| ||||||||| | ||||||| ||||| ||||||||||||||||||||| ||||    
T  6227679 ttgttacaatatgaaagtgcaacatatctatatctatatttttaatctaaatcaaaattttataa 6227615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 524 - 602
Target Start/End: Original strand, 19473654 - 19473731
Alignment:
Q  524 tatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgat 602  Q
    |||||||||||||||| ||||||||||||| | | | |||||| ||||||| ||||||||  |||||||||||||||||    
T  19473654 tatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgctgat 19473731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 524 - 602
Target Start/End: Original strand, 19544579 - 19544656
Alignment:
Q  524 tatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgat 602  Q
    |||||||||||||||| ||||||||||||| | | | |||||| ||||||| ||||||||  |||||||||||||||||    
T  19544579 tatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgctgat 19544656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 524 - 602
Target Start/End: Complemental strand, 19588117 - 19588040
Alignment:
Q  524 tatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgat 602  Q
    |||||||||||||||| ||||||||||||| | | | |||||| ||||||| ||||||||  |||||||||||||||||    
T  19588117 tatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgctgat 19588040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 6235436 - 6235372
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||||| || |||||| | ||||||| |||||||||||||| |||||||||||| ||||    
T  6235436 ttgttacaatatgaaggtgcaacatatctatatctataattttaatcaaaatcaaaattttataa 6235372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 25249104 - 25249203
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| |||| || |||||||||||||||||||||||| ||||||||  | | | |||||| | ||||| ||| |||| ||||||| ||||||    
T  25249104 ctattgtactcattcatgat-cttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtacccttatgcttgctatcttgc 25249202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 13219242 - 13219292
Alignment:
Q  230 tgttacaatataaaagtgcaaaagatctatacctataattttaatctaaat 280  Q
    ||||||||||||||||||||||| || |||||||||| |||||||| ||||    
T  13219242 tgttacaatataaaagtgcaaaatatttatacctatatttttaatcaaaat 13219292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 18887377 - 18887313
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||| || |||||||   ||| |||||||| ||||||||||||| |||||||||||||||||    
T  18887377 ttgttactatttaaaagtcacaaacatctatacatataattttaatcaaaatcaaaatttcataa 18887313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 21553557 - 21553525
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  21553557 atctatacctataattttaatctaaatcaaaat 21553525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 41372634 - 41372692
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatt 287  Q
    |||||||| ||| |||||| |||| |  ||||||||||||||||||| |||||||||||    
T  41372634 ttgttacactatgaaagtgtaaaatagttatacctataattttaatcaaaatcaaaatt 41372692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 15147727 - 15147690
Alignment:
Q  256 ctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  15147727 ctatacttataattttaatcaaaatcaaaatttcataa 15147690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 16338108 - 16338169
Alignment:
Q  232 ttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||||||||| || |||| || || ||||||||||||| |  |||||||||||||||||    
T  16338108 ttacaatataaaattgtaaaatatttagacctataattttagttaaaatcaaaatttcataa 16338169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 44607623 - 44607559
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||||||||||||| ||| || || ||||| | ||||||||||| ||||| |||||| ||||    
T  44607623 ttgttacaatataaaagcgcacaatatttatacgtgtaattttaatcaaaatcgaaattttataa 44607559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 45521628 - 45521660
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||| ||||||||||    
T  45521628 atctatacctataattttaatcaaaatcaaaat 45521660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 42470375 - 42470307
Alignment:
Q  224 tatagttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttcataa 293  Q
    |||||||||||||||||||||||| |||| || ||| |||||| |||||||| |||||||||||||||||    
T  42470375 tatagttgttacaatataaaagtgtaaaatatttat-cctatatttttaatcaaaatcaaaatttcataa 42470307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 618
Target Start/End: Original strand, 9487459 - 9487554
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgatgattatgaccttcttc 618  Q
    |||||||||||||||||||| ||| ||||| | | ||  | |||||||||||||| || ||||| |||||||||||||||||| | ||||| |||||||    
T  9487459 cttttatcaatctattcatt-ctacaatgaatctctg--agtatctctcacatgaataatcttatgcttgctttcttgctgatcactatgatcttcttc 9487554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 10382276 - 10382336
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatttc 289  Q
    |||||||||||| ||||||||||  |||||||| |||| ||| |||| |||||||||||||    
T  10382276 ttgttacaatattaaagtgcaaattatctatacatatattttaaatcaaaatcaaaatttc 10382336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 17449409 - 17449507
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgc 598  Q
    |||||||||||| ||||||| ||||| ||||||||||||| |||| |||||| || | | | |||||| ||||||| |||||||  ||||||| ||||||    
T  17449409 ctattgtactcattcattat-ctttt-tcaatctattcatgtctacaatgagattctatgagtatctcccacatgagtactcttttgcttgctatcttgc 17449506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 20170821 - 20170853
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  20170821 atctatacctataattttaatctaaatcaaaat 20170853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 32823983 - 32823951
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  32823983 atctatacctataattttaatctaaatcaaaat 32823951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 47511933 - 47511901
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  47511933 atctatacctataattttaatctaaatcaaaat 47511901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 599
Target Start/End: Original strand, 48941698 - 48941801
Alignment:
Q  499 ctattgtactcaatcattatacttttatcaa-tctattcatttctata--atgagtttttgtaaatatctctcacatgattactcttaggcttgctttct 595  Q
    |||||||||||| ||| |||  ||| ||||| ||||||||||||||||  |||||||| | | | |||||||||||||| ||||||||  |||||| |||    
T  48941698 ctattgtactcattcagtatcttttaatcaaatctattcatttctatataatgagtttatatgagtatctctcacatgaatactcttatacttgctctct 48941797  T
Q  596 tgct 599  Q
    ||||    
T  48941798 tgct 48941801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 40368158 - 40368197
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  40368158 atctatacctatacttttaatcaaaatcaaaatttcataa 40368197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 602
Target Start/End: Complemental strand, 5924898 - 5924817
Alignment:
Q  520 cttttatcaatctattcatttctataatgagtttttgtaaatatctctcacatgattactcttaggcttgctttcttgctgat 602  Q
    |||||||||||||||||||| ||||||||||||| | | | ||||||  | |||| |||||||| ||||||||| || |||||    
T  5924898 cttttatcaatctattcatt-ctataatgagtttctatgagtatctcctatatgaatactcttatgcttgcttttttactgat 5924817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 27506659 - 27506713
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaa 283  Q
    |||||||||||| |||||  |||| ||||||| |||||||||||||| |||||||    
T  27506659 ttgttacaatatgaaagtataaaatatctatatctataattttaatcaaaatcaa 27506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 37140369 - 37140323
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatc 275  Q
    ||||||||| |||||||||||||| |  |||||||||||||||||||    
T  37140369 ttgttacaaaataaaagtgcaaaatacatatacctataattttaatc 37140323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 39275778 - 39275724
Alignment:
Q  232 ttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||| |||||||| || ||||| |||||||| |||| ||||||||||    
T  39275778 ttacaatataaatgtgcaaaatatttatacatataatttgaatcaaaatcaaaat 39275724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 41103563 - 41103621
Alignment:
Q  229 ttgttacaatataaaagtgcaaaagatctatacctataattttaatctaaatcaaaatt 287  Q
    ||||||||||||||||    |||| || ||||||||||||||||||| |||||||||||    
T  41103563 ttgttacaatataaaatgataaaatatttatacctataattttaatcaaaatcaaaatt 41103621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 16418049 - 16418081
Alignment:
Q  261 cctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||||||||||| |||||||||||||||||    
T  16418049 cctataattttaatcaaaatcaaaatttcataa 16418081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 25704363 - 25704327
Alignment:
Q  257 tatacctataattttaatctaaatcaaaatttcataa 293  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  25704363 tatacctataattttaatcaaaatcaaaattttataa 25704327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 51760544 - 51760512
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||| ||||||||||||||||||    
T  51760544 atctatacctataagtttaatctaaatcaaaat 51760512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 28396 - 28428
Alignment:
Q  254 atctatacctataattttaatctaaatcaaaat 286  Q
    |||||||||||||||||||||||||||||||||    
T  28396 atctatacctataattttaatctaaatcaaaat 28428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University