View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_1D_high_12 (Length: 292)
Name: NF2853_1D_high_12
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 38919880 - 38919701
Alignment:
| Q |
22 |
gtacaaatatcatttctcttttgattatgatttagctttgactcaaataataatataatcaaaggaaaaggctaaaatgcacgacataaaatttggtcac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| |
|
|
| T |
38919880 |
gtacaaatatcatttctcttttgattatgattaa-ctttgactcaaataataatataatcaaaggaaaaagataaaatgcacgacataaaatttcgtcac |
38919782 |
T |
|
| Q |
122 |
cattgcacgaatgaattgtatctaggagttatagtacttttttaattctgtttttacttcaaatgatcacactatagtcta |
202 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38919781 |
cattgcacgaatgaattgtatgtagtagttatagtacttttttaattctgtttttacttcaaatgatcacactatagtcta |
38919701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 85 - 279
Target Start/End: Complemental strand, 27405403 - 27405214
Alignment:
| Q |
85 |
ggaaaaggctaaaatgcacgacataaaatttggtcaccattgcacgaatgaattgtatctaggagttatagtacttttttaattctgtttttacttcaaa |
184 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||||||||||||||||| |||||| | | ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27405403 |
ggaaaaagctaaaacacacgacataaaatttcgtcaccattgcacgaatgagttgtatgttgtagttagagtacttttttaattctgtttttacttcaaa |
27405304 |
T |
|
| Q |
185 |
tgatcacactatagtctagcatatgtgtttgtctatgagaaaacacaaacaattctctcctcatcattgcacctttgtgagttgctgatgtccat |
279 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
27405303 |
tgat--cactgtagtctagcatatgtgtttg---atgagaaaacacaaagacttctctcctcatcactgtacctatgtgagttgctgatgtccat |
27405214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 53473627 - 53473599
Alignment:
| Q |
22 |
gtacaaatatcatttctcttttgattatg |
50 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
53473627 |
gtacaaatatcatttctcttttgattatg |
53473599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 85 - 275
Target Start/End: Original strand, 5589764 - 5589952
Alignment:
| Q |
85 |
ggaaaaggctaaaatgcacgacataaaatttggtcaccattgcacgaatgaattgtatctaggagttatagtacttttttaattctgtttttacttcaaa |
184 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||| | | ||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
5589764 |
ggaaaaagctaaaacgcacgacataaaatttcttcaccattgcacgaatgagttgtaagttgtagttagaatacttttttaattatgcttttacttcaaa |
5589863 |
T |
|
| Q |
185 |
tgatcacactatagtctagcatatgtgtttgtctatgagaaaacacaaacaattctctcctcatcattgcacctttgtgagttgctgatgt |
275 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
5589864 |
cgatcac--tgtagtctagcatatgtgtttgtctatgagaaaacacaaacacttctctcctcatcactgtatctttgtgagttgctgatgt |
5589952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 279
Target Start/End: Original strand, 228938 - 229059
Alignment:
| Q |
157 |
acttttttaattctgtttttacttcaaatgatcacactatagtctagcatatgtgtttgtctatgagaaaacac-aaacaattctctcctcatcattgca |
255 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||| | | ||||| ||||| || ||||||||||| || | |
|
|
| T |
228938 |
acttttttaattgtgtttttacttcaaatggtcaaa--gtagtctagcatatgtgtttgtctataaaataacacaaaacacttttctcctcatcactgta |
229035 |
T |
|
| Q |
256 |
cctttgtgagttgctgatgtccat |
279 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
229036 |
gctttgtgagttgctgatctccat |
229059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 279
Target Start/End: Complemental strand, 31071324 - 31071128
Alignment:
| Q |
82 |
aaaggaaaaggctaaaatgcacgacataaaatttggtcaccattgcacgaatgaattgtatctaggagttatagtacttttttaattctgtttttacttc |
181 |
Q |
| |
|
||||||||| ||||||| ||||||| | || || |||||||||||||||| ||||| | | | ||| || |||||||||||| |||||||||||| |
|
|
| T |
31071324 |
aaaggaaaaagctaaaacacacgacaaagaaattcatcaccattgcacgaattaattggaagttgttgtttgagaacttttttaattatgtttttacttc |
31071225 |
T |
|
| Q |
182 |
aaatgatcacactatagtctagcatatgtgtttgtctatgagaaaacacaaa-caattctctcctcatcattgcacctttgtgagttgctgatgtccat |
279 |
Q |
| |
|
||||| | | | || || |||||||||||||||||||| | | |||| ||| || || |||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
31071224 |
aaatggttaaagta--gtttagcatatgtgtttgtctataaaataacataaaacacttttctcctcatcattgtaactttgtgagttgctgatctccat |
31071128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 50525976 - 50525855
Alignment:
| Q |
157 |
acttttttaattctgtttttacttcaaatgatcacactatagtctagcatatgtgtttgtctatgagaaaaca-caaacaattctctcctcatcattgca |
255 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | || |||||||||||||||||||||| | | |||| ||||| || ||||||||||| || | |
|
|
| T |
50525976 |
acttttttaattatgtttttacttcaaatggtcaaa--gtaatctagcatatgtgtttgtctataaaataacataaaacacttttctcctcatcactgta |
50525879 |
T |
|
| Q |
256 |
cctttgtgagttgctgatgtccat |
279 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
50525878 |
gctttgtgagttgctgatctccat |
50525855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University