View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_1D_high_15 (Length: 289)
Name: NF2853_1D_high_15
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 23333574 - 23333847
Alignment:
| Q |
1 |
aagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23333574 |
aagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaa |
23333673 |
T |
|
| Q |
101 |
cacgaacaacagttcctgaggtaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaactt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23333674 |
cacgaacaacagttcctgaggcaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaactt |
23333773 |
T |
|
| Q |
201 |
atcaacctctttgggggagtactgcttcagctgcattctggcacacaattttatcggtcaacttcgtgatgtcc |
274 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
23333774 |
atcaacctcttggggggagtactgcttcagctgcattccggcacacaattttatcggtcaacttcgttatgtcc |
23333847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University