View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_high_18 (Length: 229)
Name: NF2853_1D_high_18
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 21440854 - 21440967
Alignment:
| Q |
7 |
ccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatttgtcactccttagtcacacatttacataccaaaatgact |
106 |
Q |
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| T |
21440854 |
ccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatgtgtctctccttagtcacacatttacataccaaaatgact |
21440953 |
T |
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| Q |
107 |
gtttattctaaata |
120 |
Q |
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| T |
21440954 |
gtttattctaaata |
21440967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 21441352 - 21441469
Alignment:
| Q |
112 |
ttctaaataaaacataaaaaattcaaattttcaaatacaaattatatgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacata |
211 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21441352 |
ttctaaataaaacataaaaaattcgaattttcagatacaaattataggaataatgcacaaatttaagaaattcattctcgttcagcgtaagagacacata |
21441451 |
T |
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| Q |
212 |
cactatgaaacattgaca |
229 |
Q |
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| T |
21441452 |
cactatgaaacattgaca |
21441469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 21440211 - 21440383
Alignment:
| Q |
57 |
attctcaaatttgtcactccttagtcacacatttacataccaaaatgactgtttattctaaataaaacataaaaa------attcaaattttcaaataca |
150 |
Q |
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|||||||||| |||| ||| || ||||||||||||||| ||||||||| |||||||||||||| ||| | ||||| | | |||| || | |||| |
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| T |
21440211 |
attctcaaatgtgtctctcatttgtcacacatttacatgccaaaatgattgtttattctaaattaaaaaaaaaaactaaagaatttaattctccattaca |
21440310 |
T |
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| Q |
151 |
aattat---atgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacatacactatgaa |
220 |
Q |
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| T |
21440311 |
agttataaaaagaagaatgcacaactttaagaaattcattctattacagcttaagatacacatacactatgaa |
21440383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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