View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_high_6 (Length: 423)
Name: NF2853_1D_high_6
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 235 - 404
Target Start/End: Complemental strand, 1353376 - 1353206
Alignment:
| Q |
235 |
ggaaaactatatttttgagaatataattcgtgagatt-atgatctacgattacagatcatgtacccatatgatttatcttactgagtaaaacaagactat |
333 |
Q |
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| T |
1353376 |
ggaaaactatatttttgagaatataattcgtgagatttatgatctacgattacagatcatgtacccatattatttatcttacctggtaaaacaagactat |
1353277 |
T |
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| Q |
334 |
aattcgtaattgtatataaacatttgccctagatttttattttgtctactggttttgttggaactatgatt |
404 |
Q |
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| T |
1353276 |
aattcgtaattgtatatatacatttgccctagatttttattttgtctactggttttgttggaactatgatt |
1353206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 1353732 - 1353685
Alignment:
| Q |
11 |
tgttaattaaatagttagaattagaaagagataaaggaaaaactatca |
58 |
Q |
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| T |
1353732 |
tgttaattaaatagttagaattagaaagagataaaggaaaaactatca |
1353685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 1353604 - 1353562
Alignment:
| Q |
162 |
taatccgaactgcataagacacgtgaaaaacttgtaggatgag |
204 |
Q |
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| T |
1353604 |
taatccgaactgcataagacgcttgaaaaacttgtaggatgag |
1353562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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