View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_low_1 (Length: 702)
Name: NF2853_1D_low_1
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 22 - 679
Target Start/End: Original strand, 21596836 - 21597493
Alignment:
| Q |
22 |
caacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagcaacgcaatagccataagcat |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
21596836 |
caacaacaaacaaacacgaaagaaccttccataaatcgctcttatcagttgattccctcgcataatatctcctcacaagcaaagcaatcgccataagcat |
21596935 |
T |
|
| Q |
122 |
aaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaagtgtagca |
221 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21596936 |
aaaaatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaagtgtagca |
21597035 |
T |
|
| Q |
222 |
ttaataggtgttccagttttaggatgaataagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtatacctagcttgtcccattgacc |
321 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21597036 |
ttaataggtgttccagtttttggatgaataagtgcaaaaaagggtggaatcatttgtgaccttgcaatttgagtagtgtacctagcttgtcccattgacc |
21597135 |
T |
|
| Q |
322 |
caacaagcaaacttgttgtcattcctttcaaagcacaaatactcactaaatatttaccccatttcataccaatttgaacaaaagcaaccgaataagcagc |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21597136 |
caacaagcaaacttgttgtcattcctttcaaagcacaaatactcactaaatatttaccccatttcataccaatttgaacaaaagcaactgaataagcagc |
21597235 |
T |
|
| Q |
422 |
tccaacatcaatctcactatacttaaccatattcacaagtgccaatgccattaaacaataaataaccgtgatcatagacattgaaccaattaaaccaata |
521 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21597236 |
tccagcatcaatctcactatacttaaccatattcacaagtgccaatgccatcaaacaataaataaccgtgatcatagacattgaaccaattaaaccaata |
21597335 |
T |
|
| Q |
522 |
ggtatatctcttgaagggtttttagtttcttcagccatagttgcaaccatatcaaaaccggtataagaccaatacacaacagctgcagcgttaaaaacac |
621 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21597336 |
ggtatatctctagaagggtttttagtttcttcagccatagttgcaaccatatcgaaaccggtataagaccaatacacaacagctgcggcgttaaaaacac |
21597435 |
T |
|
| Q |
622 |
ctttaacaccgtaaggaaaaaacggtgttaaatttgacgacttcccgtgtataaaacc |
679 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21597436 |
ctttaacaccgtaaggaaaaaacggtgttaaatttgaagacttcccgtgtataaaacc |
21597493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 22 - 392
Target Start/End: Original strand, 11987000 - 11987370
Alignment:
| Q |
22 |
caacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagcaacgcaatagccataagcat |
121 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11987000 |
caacaacaaacaaacacaaaagaaccttccataaatcactcttatccgttgcttccctcgcataatatctcctcacaagcaacgcaatagccataagcat |
11987099 |
T |
|
| Q |
122 |
aaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaagtgtagca |
221 |
Q |
| |
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||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11987100 |
aaaaatgaaaagagtacttacagaaaaaacactagccagaacatccacactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaagtgtagca |
11987199 |
T |
|
| Q |
222 |
ttaataggtgttccagttttaggatgaataagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtatacctagcttgtcccattgacc |
321 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11987200 |
ttaataggtgttccagttttgggatgaacaagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtgtacctagcttgtcccattgacc |
11987299 |
T |
|
| Q |
322 |
caacaagcaaacttgttgtcattcctttcaaagcacaaatactcactaaatatttaccccatttcatacca |
392 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11987300 |
caacaagcaaacttgttgtcattcctttcaaagaacaaatactcactaaatatttaccccatttcatacca |
11987370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 567
Target Start/End: Original strand, 15115555 - 15115655
Alignment:
| Q |
467 |
tgccattaaacaataaataaccgtgatcatagacattgaaccaattaaaccaataggtatatctcttgaagggtttttagtttcttcagccatagttgca |
566 |
Q |
| |
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|||||| || ||||| ||||| ||||||| ||||||||||||||| || || || ||||| || ||| || |||||||||||||||||||| |||||| |
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| T |
15115555 |
tgccatcaagcaatagataactgtgatcacagacattgaaccaatcaagcctattggtatgtcctttggcggatttttagtttcttcagccatggttgca |
15115654 |
T |
|
| Q |
567 |
a |
567 |
Q |
| |
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| |
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| T |
15115655 |
a |
15115655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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