View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_1D_low_10 (Length: 376)

Name: NF2853_1D_low_10
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_1D_low_10
NF2853_1D_low_10
[»] chr7 (25 HSPs)
chr7 (1-358)||(140287-140644)
chr7 (1-239)||(10584170-10584408)
chr7 (37-358)||(1872992-1873310)
chr7 (37-358)||(18495573-18495894)
chr7 (167-358)||(10649615-10649806)
chr7 (191-358)||(8873163-8873330)
chr7 (167-358)||(1882594-1882785)
chr7 (1-102)||(5797682-5797782)
chr7 (62-161)||(10648808-10648907)
chr7 (136-207)||(16223865-16223936)
chr7 (136-239)||(7318579-7318682)
chr7 (167-241)||(3190749-3190823)
chr7 (40-97)||(21884988-21885045)
chr7 (164-210)||(3329362-3329408)
chr7 (164-214)||(15869929-15869979)
chr7 (40-90)||(26134563-26134613)
chr7 (1-50)||(8293920-8293969)
chr7 (1-53)||(8053938-8053990)
chr7 (164-212)||(10331640-10331688)
chr7 (39-95)||(10339524-10339580)
chr7 (21-89)||(14754974-14755042)
chr7 (167-207)||(16058673-16058713)
chr7 (306-358)||(17152722-17152774)
chr7 (1-53)||(18662611-18662663)
chr7 (306-358)||(31493389-31493441)
[»] chr1 (14 HSPs)
chr1 (1-358)||(32382579-32382936)
chr1 (1-356)||(22620433-22620789)
chr1 (136-290)||(12012455-12012608)
chr1 (167-241)||(24214869-24214943)
chr1 (136-214)||(28008410-28008488)
chr1 (1-50)||(34481140-34481189)
chr1 (306-358)||(34481413-34481465)
chr1 (136-214)||(18100729-18100807)
chr1 (167-220)||(14779885-14779938)
chr1 (1-53)||(12208773-12208825)
chr1 (307-355)||(15299475-15299523)
chr1 (3-75)||(17017568-17017639)
chr1 (167-207)||(27117443-27117483)
chr1 (1-69)||(28008276-28008344)
[»] chr6 (12 HSPs)
chr6 (1-358)||(23645338-23645695)
chr6 (30-358)||(22565737-22566060)
chr6 (167-241)||(21688540-21688614)
chr6 (306-355)||(14725883-14725932)
chr6 (21-102)||(28585858-28585939)
chr6 (167-239)||(11177270-11177342)
chr6 (1-71)||(9726194-9726263)
chr6 (306-356)||(9726477-9726527)
chr6 (167-241)||(28933347-28933421)
chr6 (1-50)||(25927184-25927233)
chr6 (1-53)||(2586889-2586941)
chr6 (167-240)||(9838690-9838762)
[»] chr5 (14 HSPs)
chr5 (1-357)||(24260687-24261043)
chr5 (1-154)||(24851947-24852099)
chr5 (31-152)||(15470139-15470260)
chr5 (146-238)||(22755837-22755929)
chr5 (193-356)||(19085799-19085958)
chr5 (37-102)||(29263409-29263474)
chr5 (21-90)||(32417186-32417255)
chr5 (306-358)||(17171128-17171180)
chr5 (62-130)||(19085989-19086057)
chr5 (21-97)||(26307803-26307879)
chr5 (20-99)||(15544239-15544318)
chr5 (1-71)||(36175304-36175374)
chr5 (1-90)||(17635449-17635537)
chr5 (1-53)||(24245419-24245471)
[»] chr4 (9 HSPs)
chr4 (1-313)||(12761415-12761729)
chr4 (1-159)||(20315171-20315327)
chr4 (62-294)||(3775052-3775274)
chr4 (136-241)||(14649200-14649305)
chr4 (21-107)||(22526555-22526641)
chr4 (21-89)||(9052865-9052933)
chr4 (176-238)||(22173241-22173303)
chr4 (167-240)||(13909192-13909265)
chr4 (1-45)||(26115789-26115833)
[»] chr8 (7 HSPs)
chr8 (1-102)||(5851111-5851214)
chr8 (167-239)||(14528475-14528547)
chr8 (1-53)||(9642049-9642101)
chr8 (31-89)||(15238998-15239056)
chr8 (21-87)||(31288530-31288596)
chr8 (306-363)||(24905100-24905157)
chr8 (164-220)||(34497448-34497504)
[»] scaffold0622 (1 HSPs)
scaffold0622 (176-290)||(1304-1417)
[»] scaffold0005 (1 HSPs)
scaffold0005 (136-241)||(167987-168092)
[»] chr3 (8 HSPs)
chr3 (21-97)||(23055995-23056071)
chr3 (167-220)||(38083893-38083946)
chr3 (136-240)||(21325644-21325748)
chr3 (1-72)||(21303211-21303282)
chr3 (306-356)||(20398090-20398140)
chr3 (304-353)||(821100-821149)
chr3 (1-58)||(20023423-20023480)
chr3 (1-81)||(8143785-8143864)
[»] chr2 (11 HSPs)
chr2 (306-356)||(27418692-27418742)
chr2 (306-356)||(27419838-27419888)
chr2 (37-102)||(9239348-9239412)
chr2 (176-241)||(29849673-29849738)
chr2 (1-98)||(19287500-19287597)
chr2 (1-87)||(45553300-45553384)
chr2 (172-241)||(20174327-20174396)
chr2 (306-355)||(21078202-21078251)
chr2 (306-355)||(26291542-26291591)
chr2 (167-207)||(28928980-28929020)
chr2 (21-89)||(45621722-45621790)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-102)||(15293-15393)
[»] scaffold0671 (1 HSPs)
scaffold0671 (1-53)||(602-654)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-57)||(21436-21492)


Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 140287 - 140644
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140287 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 140386  T
Q  101 taattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140387 taattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgt 140486  T
Q  201 ggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  140487 ggggtctatactatatcggtcgattaaggtctatccctccgcatgttaagttatacctactaaccatacgatgatccttacgtgtggggtttatctaacc 140586  T
Q  301 catgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140587 catgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 140644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 10584408 - 10584170
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    ||||||||||| |||||||||||||||| | |||| | |||| ||||||| || |||| | ||||||| |||||||||||||||||||| ||||||| ||    
T  10584408 ttacctgttttggttgcagaaatgttagcaacggttatgattttttgaattccctctattcatttgttagatttacgtaacagtcaagtcttattcaagt 10584309  T
Q  101 taattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgt 200  Q
    | ||||||||||||| | |||||||||||| || ||||||| |||||||||||| ||||||  || |||| |||||||||||||    | |||||||| |    
T  10584308 tgattcacgtaagggttatttaagtgatgagttcgtgggacatgataacctaatcagttgtcaagttgcacctgctgatcgcacatcaaacattacgtat 10584209  T
Q  201 ggggtctatactatatcggtcgattaaggtctatccctc 239  Q
    |||||||| ||||| | | |||||| |||| ||||||||    
T  10584208 ggggtctacactatcttgatcgatttaggtatatccctc 10584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 358
Target Start/End: Original strand, 1872992 - 1873310
Alignment:
Q  37 aggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgttaattcacgtaagggctctttaagtgatgaatttgt 136  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||  | |||||||  ||||| || ||||    |||| || ||    
T  1872992 aggattctttgaatcccctctatttatttgttggatttacgtaacagtcaagtcttattcgaggtaattcatataaggactattta----atgagttcgt 1873087  T
Q  137 gggacgtgataacctaattag-ttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatc 235  Q
    ||||| |||||||||||| || ||||  || |||| |||||| |||||||||||   ||| |||   ||| |||||||| | |||||||||||||||||     
T  1873088 gggacatgataacctaatcagtttgttaagttgcacctgctggtcgcacggtgatacttatgtgcaaggtttatactatcttggtcgattaaggtctata 1873187  T
Q  236 cctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagtt 335  Q
    ||||||  |||| |||| ||| |  | |||| ||||| | | ||||||||| ||||||||| || || | |||||||||||||||||  | |||||| ||    
T  1873188 cctccgcctgttgagttgtacgtgttgatcacacgatcatctttacgtgtgcggtttatctcactcaagggtaattgaaacataaacaaatggtagattt 1873287  T
Q  336 cctagatttccaaaggtatgatg 358  Q
    |||||| ||||||||||||||||    
T  1873288 cctagaattccaaaggtatgatg 1873310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 358
Target Start/End: Original strand, 18495573 - 18495894
Alignment:
Q  37 aggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgttaattcacgtaagggctctttaagtgatgaatttgt 136  Q
    |||||||||| |||||| |||| ||||||||||||||||||||| || ||||| ||||||  ||||||||||||||||| | |||||||||||| |||||    
T  18495573 aggattctttaaatcccctctatttatttgttggatttacgtaagagacaagtcttattcgagttaattcacgtaagggttatttaagtgatgagtttgt 18495672  T
Q  137 gggacgtgataacctaattag-ttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatc 235  Q
     ||||||||||||| ||| || ||||  || |||| ||| |  | |||  |||| | ||||||| |||||||||||| |  ||||||||||  || ||||    
T  18495673 aggacgtgataaccaaatcagtttgtcaagctgcacctggtagttgcatagtgatctttacgtgcggggtctatactttcacggtcgattacagtttatc 18495772  T
Q  236 cctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagtt 335  Q
    ||||||  |||| |||| ||| |  | |||| | | ||| | |||||||||||| |||||| || || | |||||||||||||||||||| | | |||||    
T  18495773 cctccgcctgttgagttgtacttgttgatcacatggtgatctttacgtgtgggg-ttatctcactcaggtgtaattgaaacataaacttaagttcgagtt 18495871  T
Q  336 cctagatttccaaaggtatgatg 358  Q
    |||| |||||| |||||||||||    
T  18495872 cctaaatttccgaaggtatgatg 18495894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 167 - 358
Target Start/End: Original strand, 10649615 - 10649806
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatca 266  Q
    |||| ||| ||||||| |||||| ||||| ||| || || |||||||| | | | ||||||||| ||||||||   ||||| |||| ||||||   ||||    
T  10649615 tgcacctgttgatcgctcggtgatcattatgtgcggagtttatactatcttgattgattaaggtttatccctctacatgttgagttgtacctatggatca 10649714  T
Q  267 tacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 358  Q
     | ||||| ||||| ||||||||||||||| || |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  10649715 catgatgatccttatgtgtggggtttatctcactcatgggtaattgaaacttaaacttagggtagagttcctagatttcgaaaggtatgatg 10649806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 358
Target Start/End: Original strand, 8873163 - 8873330
Alignment:
Q  191 cattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggt 290  Q
    |||||| ||| ||||||||||  | | |||||||| ||||||||| |||||  |||| |||| ||||| || |||| | | ||| ||||| ||||| |||    
T  8873163 cattacatgtagggtctataccgtcttggtcgatttaggtctatctctccgcctgttgagttgtacctgctgatcacatggtgatccttatgtgtgtggt 8873262  T
Q  291 ttatctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 358  Q
    || ||| ||  | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  8873263 ttgtctcactgaggagtaattgaaacataaacataggatagagttcctagatttccaaaggtatgatg 8873330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 358
Target Start/End: Original strand, 1882594 - 1882785
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatca 266  Q
    |||| |||||| ||||||||||| | |||||||   ||| |||||||| | ||||||||||||||||| ||||||  |||| |||| ||| || | ||||    
T  1882594 tgcacctgctggtcgcacggtgatccttacgtgcaaggtttatactatcttggtcgattaaggtctatacctccgcctgttgagttgtacttattgatca 1882693  T
Q  267 tacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 358  Q
     ||||| | | |||||| |   |||||||| || ||   |||||||||||||||||||| |||||| |||| ||| || |||||||||||||    
T  1882694 cacgatcatctttacgtatacagtttatctcactcaaaggtaattgaaacataaacttatggtagatttccaagaattgcaaaggtatgatg 1882785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5797682 - 5797782
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    |||||||||||  |||||||| |||||| |||||| ||||||||||||||||| ||||  || ||||| || |||| |||||||||||| ||||||||||    
T  5797682 ttacctgttttgattgcagaa-tgttagcagcggttaggattctttgaatcccctctatgtagttgttcgaattacttaacagtcaagtcttattcatgt 5797780  T
Q  101 ta 102  Q
    ||    
T  5797781 ta 5797782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 10648808 - 10648907
Alignment:
Q  62 atttgttggatttacgtaacagtcaagttttattcatgttaattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagttgt 161  Q
    ||||||||||||||||||||| |||||| ||||||  ||||||||||||||||| | ||||||| |  | || ||||||| |||||| ||||| ||||||    
T  10648808 atttgttggatttacgtaacaatcaagtcttattcgagttaattcacgtaagggatatttaagtaaaaagttcgtgggacatgataatctaatcagttgt 10648907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 16223936 - 16223865
Alignment:
Q  136 tgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtct 207  Q
    ||||||||||||||||||||||||||  || |||| |||||| ||||||||||| | |||| ||||||||||    
T  16223936 tgggacgtgataacctaattagttgtcaagttgcacctgctggtcgcacggtgatccttacatgtggggtct 16223865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 7318579 - 7318682
Alignment:
Q  136 tgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatc 235  Q
    |||||||| |||||||| |  |||||  || ||||  ||||||||||||||||| |  |||||| |||||||||||||| ||||| |||  |||||||||    
T  7318579 tgggacgttataacctagtcggttgtcaagctgcacttgctgatcgcacggtgatccatacgtgcggggtctatactatctcggttgatctaggtctatc 7318678  T
Q  236 cctc 239  Q
    ||||    
T  7318679 cctc 7318682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 3190823 - 3190749
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 241  Q
    ||||||||||||||||||| | | | |||||||||||||||||||||| ||| |  ||  |||||||||||||||    
T  3190823 tgcatctgctgatcgcacgataatccttacgtgtggggtctatactatctcgatttatctaggtctatccctccg 3190749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 21885045 - 21884988
Alignment:
Q  40 attctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattca 97  Q
    |||||||||||||| | ||  ||||||||||| ||||||||||||||||| |||||||    
T  21885045 attctttgaatcccctatatatatttgttggaattacgtaacagtcaagtcttattca 21884988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 3329408 - 3329362
Alignment:
Q  164 agatgcatctgctgatcgcacggtgaccattacgtgtggggtctata 210  Q
    ||||||| ||||||||| |||||||| | ||||||||||||||||||    
T  3329408 agatgcacctgctgatcacacggtgatccttacgtgtggggtctata 3329362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 15869929 - 15869979
Alignment:
Q  164 agatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactat 214  Q
    ||||||| |||||||||||| ||||| | |||||||| |||||||||||||    
T  15869929 agatgcacctgctgatcgcatggtgatccttacgtgttgggtctatactat 15869979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 26134613 - 26134563
Alignment:
Q  40 attctttgaatcccttctacttatttgttggatttacgtaacagtcaagtt 90  Q
    |||||||||||||| | || |||||||||||| ||| ||||||||||||||    
T  26134613 attctttgaatcccctttatttatttgttggaattatgtaacagtcaagtt 26134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8293969 - 8293920
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaat 50  Q
    ||||||||||| |||||||||||||| | || ||| ||||||||||||||    
T  8293969 ttacctgttttggttgcagaaatgttcgcagtggttaggattctttgaat 8293920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8053990 - 8053938
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatccc 53  Q
    ||||||||||| |||||||||| || || ||| || |||||||||||||||||    
T  8053990 ttacctgttttggttgcagaaaagtaagcagcagttaggattctttgaatccc 8053938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 10331640 - 10331688
Alignment:
Q  164 agatgcatctgctgatcgcacggtgaccattacgtgtggggtctatact 212  Q
    |||||||||| ||| || |||||||| | ||||||||||||||||||||    
T  10331640 agatgcatctactggtcacacggtgatccttacgtgtggggtctatact 10331688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 10339580 - 10339524
Alignment:
Q  39 gattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttatt 95  Q
    ||||||||||||| ||| || ||||||||| || |||| |||||||||||| |||||    
T  10339580 gattctttgaatctcttttatttatttgttagaattacttaacagtcaagtcttatt 10339524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 14755042 - 14754974
Alignment:
Q  21 aatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagt 89  Q
    ||||||| | ||||| | ||||||||||||||| |||| ||||| |||||| |||  ||||||||||||    
T  14755042 aatgttaatggcggttaagattctttgaatcccatctatttattagttggaattaattaacagtcaagt 14754974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 16058713 - 16058673
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtct 207  Q
    |||| |||||||||||||||||||| ||||||| |||||||    
T  16058713 tgcacctgctgatcgcacggtgacccttacgtgcggggtct 16058673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 17152774 - 17152722
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 358  Q
    ||||||||||||||||||||   | | ||||||| ||||||||||||||||||    
T  17152774 gtaattgaaacataaacttaaattggtgttcctaaatttccaaaggtatgatg 17152722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18662611 - 18662663
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatccc 53  Q
    ||||||||||| ||||||||||||| || |||||| |||| |||| |||||||    
T  18662611 ttacctgttttggttgcagaaatgtaagcagcggttaggactcttcgaatccc 18662663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 31493389 - 31493441
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 358  Q
    |||||||||||||| ||||| | | ||||| ||| ||||||||||||||||||    
T  31493389 gtaattgaaacatagacttaagttggagtttctaaatttccaaaggtatgatg 31493441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 32382936 - 32382579
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    ||||||||||| |||||||||||||||| ||| || ||||||||||||||||| |  | | |||||||| ||||||||||||||||||| ||||||   |    
T  32382936 ttacctgttttggttgcagaaatgttagcagccgttaggattctttgaatccccttcattcatttgttgaatttacgtaacagtcaagtcttattcgatt 32382837  T
Q  101 taattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgt 200  Q
    ||||||||||||| ||| |||||||||||| || |||| | ||||| ||||||| ||||||  || ||||||||||||||||||||||| |||||||||     
T  32382836 taattcacgtaagagctatttaagtgatgagttcgtggaa-gtgatgacctaatcagttgtcaagctgcatctgctgatcgcacggtgatcattacgtgc 32382738  T
Q  201 ggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacc 300  Q
    |||||||||||||| |||||  |||||||||||||||||||  |||| |||| ||| |||| |||| || |||| ||||| ||||||||||||||| ||     
T  32382737 ggggtctatactatctcggttcattaaggtctatccctccgtttgttgagttgtacatactgatcacaccatgatccttatgtgtggggtttatctcact 32382638  T
Q  301 catgagtaattgaaacataaacttagggtagagttcctaga-tttccaaaggtatgatg 358  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  32382637 catgggtaattgaaacataaacttcgggtagagttcctagatttttcaaaggtatgatg 32382579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 22620433 - 22620789
Alignment:
Q  1 ttacctgttttagttgcagaaa-tgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatg 99  Q
    ||||||||||| |||| ||||| ||| || |||||| | |||||||| |||||| |||| | |||| | | |||||| ||||||| |||| ||||||| |    
T  22620433 ttacctgttttggttgtagaaaatgtaagcagcggttaagattctttaaatcccctctattcatttatcgaatttacataacagttaagtcttattcaag 22620532  T
Q  100 ttaattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtg 199  Q
    ||||||||| |||||||| |||||||||||| ||| |||||| ||| | |||||| ||||||  || ||||  || |||||||||| ||| |||||| ||    
T  22620533 ttaattcacataagggctatttaagtgatgagtttttgggacatgaaatcctaatcagttgtcaagttgcacatgttgatcgcacgatgatcattacatg 22620632  T
Q  200 tggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaac 299  Q
     ||| || ||||||| |||||||||| |||||||| |||||  ||||| |||| |||||  | |||| | | ||| ||||||||||||||||||||| ||    
T  22620633 cgggatccatactatctcggtcgatttaggtctattcctccacatgttgagttgtacctgttgatcacaaggtgatccttacgtgtggggtttatctcac 22620732  T
Q  300 ccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga 356  Q
     || | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22620733 tcaagcgtaattgcaacataaacttagggtagagttcctagatttccaaaggtatga 22620789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 290
Target Start/End: Complemental strand, 12012608 - 12012455
Alignment:
Q  136 tgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatc 235  Q
    ||||||||| ||||||||| ||||||  ||  |||||||||||||||||| ||| | ||||||| |||||||||| ||| |||||||| | |||||||||    
T  12012608 tgggacgtgctaacctaatcagttgtcaagtcgcatctgctgatcgcacgatgatccttacgtgaggggtctatattatctcggtcgacttaggtctatc 12012509  T
Q  236 cctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggt 290  Q
    |||||  ||||| ||||  |||||||| ||| ||  ||| |||||| ||||||||    
T  12012508 cctcc-aatgttgagttgcacctactagtcacacagtgatccttacatgtggggt 12012455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 24214869 - 24214943
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 241  Q
    |||| |||||||| ||||||||  | |||||||||||||||||||||| | ||| |||  |||||||||||||||    
T  24214869 tgcacctgctgattgcacggtgggccttacgtgtggggtctatactatcttggttgatctaggtctatccctccg 24214943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 28008410 - 28008488
Alignment:
Q  136 tgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactat 214  Q
    |||||||| ||||| ||||  |||||  || |||| ||||||||||||| |||| | ||||||||||||||||||||||    
T  28008410 tgggacgttataacttaatcggttgtcaagctgcacctgctgatcgcacagtgatccttacgtgtggggtctatactat 28008488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34481140 - 34481189
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaat 50  Q
    ||||||||||| |||| | ||||||||||||||||||| |||||||||||    
T  34481140 ttacctgtttttgttgtaaaaatgttagtagcggtcagtattctttgaat 34481189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 34481413 - 34481465
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 358  Q
    |||||||||||||||||||| | | | ||||||| ||||||||||||||||||    
T  34481413 gtaattgaaacataaacttaagttggcgttcctaaatttccaaaggtatgatg 34481465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 18100807 - 18100729
Alignment:
Q  136 tgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactat 214  Q
    ||||||||  ||||||| || |||||  || |||| ||||||||| |||||||| | ||||||| ||||||||||||||    
T  18100807 tgggacgttctaacctacttggttgtcaagttgcacctgctgatcacacggtgatccttacgtgcggggtctatactat 18100729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 14779885 - 14779938
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggt 220  Q
    |||| |||||||||||||||||| | ||| || ||||||||||||||| |||||    
T  14779885 tgcacctgctgatcgcacggtgatccttatgtatggggtctatactatctcggt 14779938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12208773 - 12208825
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatccc 53  Q
    ||||||||||||| |||||||| || || |||||| ||||||||| |||||||    
T  12208773 ttacctgttttagctgcagaaaagtaagcagcggttaggattcttcgaatccc 12208825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 15299475 - 15299523
Alignment:
Q  307 taattgaaacataaacttagggtagagttcctagatttccaaaggtatg 355  Q
    |||||| ||||||||||||   ||||||||||| |||||||||||||||    
T  15299475 taattggaacataaacttaaattagagttcctaaatttccaaaggtatg 15299523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 17017639 - 17017568
Alignment:
Q  3 acctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggattta 75  Q
    |||||||||  |||||||| ||||||| || || ||| ||||| ||||||| |||| ||||||||||||||||    
T  17017639 acctgttttgattgcagaa-tgttagtggcagtaagggttcttcgaatcccctctatttatttgttggattta 17017568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 27117483 - 27117443
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtct 207  Q
    |||| ||||||||| |||||||| |||||||||||||||||    
T  27117483 tgcacctgctgatcacacggtgatcattacgtgtggggtct 27117443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28008276 - 28008344
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttg 69  Q
    |||| |||||| |||||||||| || || |||||| ||||||||||||||| |  ||| ||||||||||    
T  28008276 ttacttgttttggttgcagaaaagtaagcagcggttaggattctttgaatctcccctatttatttgttg 28008344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 23645695 - 23645338
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    |||| |||||| |||||| ||| || || || ||| ||| ||||||||||||  |||| |||||| |||||||||| |||||||||||| ||||||| ||    
T  23645695 ttacatgttttggttgcataaaagtaagcagtggttaggcttctttgaatccgctctatttattttttggatttacataacagtcaagtcttattcaagt 23645596  T
Q  101 taattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgt 200  Q
    ||||||| ||||||||| |||||||||||| || ||| || ||||||||||||| ||||||  ||||||| || ||||| |||||| || ||||||||||    
T  23645595 taattcatgtaagggctatttaagtgatgagttcgtgagatgtgataacctaatcagttgtcaagatgcaccttctgattgcacggagatcattacgtgt 23645496  T
Q  201 ggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacc 300  Q
    || |||| || ||| || ||||||| |||||||||||| |   |||| |||| |||||||| |||| || |||| |||||  |||||| ||||| | ||     
T  23645495 ggagtctttaatatctcagtcgatttaggtctatcccttcacttgttgagttgtacctactgatcacactatgatccttagatgtgggctttatgtcact 23645396  T
Q  301 catgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 358  Q
    || | ||| ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  23645395 caggcgtatttgaaacataaacttggggtagagttcctagatttccaaagatatgatg 23645338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 358
Target Start/End: Complemental strand, 22566060 - 22565737
Alignment:
Q  30 agcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgttaattcacgtaagggctctttaagtgatg 129  Q
    |||||| |||||| |||||||| | |||| | |||||||||||| |||||||||  |||| ||||| | ||||||||||||||||||| ||||||| ||     
T  22566060 agcggttaggattttttgaatctcctctattcatttgttggatt-acgtaacagctaagtcttattaaagttaattcacgtaagggctatttaagttatt 22565962  T
Q  130 aatttgtgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaagg 229  Q
    | | ||||||||||||||||||||| |||| |  || |  |  || | |||||||  ||| ||||||| | | | |||||| ||| ||| |||||| |||    
T  22565961 actatgtgggacgtgataacctaatcagttatcaagttatacgtgtttatcgcacaatgatcattacgagggagttctatattatctcgttcgatttagg 22565862  T
Q  230 tctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggt 329  Q
    ||||| |||||   |||| |||| |||||||| |||| ||| ||| |||||| |||||| ||||||| || || | |||||| |||||||||||||| ||    
T  22565861 tctattcctcc---tgttgagttgtacctactgatcacacggtgatccttacatgtgggatttatctcactcagg-gtaattcaaacataaacttagtgt 22565766  T
Q  330 agagttcctagatttccaaaggtatgatg 358  Q
    |||||||||||||||||||| ||||||||    
T  22565765 agagttcctagatttccaaaagtatgatg 22565737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 21688614 - 21688540
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 241  Q
    |||| ||| |||||||||||||||| ||| ||||||||| |||||||| ||||| |||  |||||||||||||||    
T  21688614 tgcacctgttgatcgcacggtgacccttatgtgtggggtatatactatctcggttgatctaggtctatccctccg 21688540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 14725883 - 14725932
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatg 355  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||    
T  14725883 gtaattgaaacataaacttaaattagagttcctagatttccaaaggtatg 14725932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 28585939 - 28585858
Alignment:
Q  21 aatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgtta 102  Q
    ||||||||  ||||| |||||||||  |||||| |||| ||| |||||||| ||||||||| ||||||| ||||||||||||    
T  28585939 aatgttagcggcggttaggattcttcaaatcccctctatttaattgttggaattacgtaaccgtcaagtcttattcatgtta 28585858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 11177270 - 11177342
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctc 239  Q
    |||| ||||| ||||||| |||| | |||||||||||||||||||||| ||||| |||| |||| ||||||||    
T  11177270 tgcacctgcttatcgcacagtgatccttacgtgtggggtctatactatctcggttgatttaggtttatccctc 11177342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9726194 - 9726263
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttgga 71  Q
    |||||||||||  |||||||| ||||||| ||||| |||||||||||||| || |||| ||||||||||||    
T  9726194 ttacctgttttgattgcagaa-tgttagtggcggttaggattctttgaattccctctatttatttgttgga 9726263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 9726477 - 9726527
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga 356  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||    
T  9726477 gtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatga 9726527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 28933421 - 28933347
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 241  Q
    |||| ||| |||||||||||||| | |||||||||||||||||||||| ||| | |||  |||| ||||||||||    
T  28933421 tgcacctgttgatcgcacggtgatccttacgtgtggggtctatactatctcgattgatctaggtttatccctccg 28933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25927233 - 25927184
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaat 50  Q
    ||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  25927233 ttacctgttttggtttcataaatgttagtagcggttaggattctttgaat 25927184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2586889 - 2586941
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatccc 53  Q
    |||| ||| ||||||||||||||||||  |||||| |||||||||||||||||    
T  2586889 ttacatgtcttagttgcagaaatgttaccagcggttaggattctttgaatccc 2586941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 9838690 - 9838762
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctcc 240  Q
    |||| |||| ||||||||| ||| | |||||||||||||||||||||  ||||| || | ||||||||||||||    
T  9838690 tgcacctgccgatcgcacgatgatccttacgtgtggggtctatactaactcggttgact-aggtctatccctcc 9838762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 7e-65; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 24260687 - 24261043
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    |||||| |||| |||||||||||||||| |||||| | ||||| ||||||||| |||| | |||||||||||||||| |||  |||||| ||||||| ||    
T  24260687 ttacctattttggttgcagaaatgttaggagcggttatgattccttgaatcccctctattcatttgttggatttacgaaacgttcaagtcttattcaagt 24260786  T
Q  101 taattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgt 200  Q
    ||||| ||||||||| |  ||||||||||| ||  ||||||||| ||||||||| | || |  |  |||| ||||||||||| |||||| | |||| ||     
T  24260787 taatttacgtaagggataattaagtgatgagttcatgggacgtgctaacctaatcaattatcaac-tgcagctgctgatcgctcggtgatccttacatgc 24260885  T
Q  201 ggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtgggg-tttatctaac 299  Q
     | ||||||| ||| |||||||||||||| |||||||||||  |||| |||  |||||  | |||| ||||||| |||||||||||||| ||||||| ||    
T  24260886 agagtctataatatctcggtcgattaaggcctatccctccgcctgttgagtcgtacctgttgatcacacgatgatccttacgtgtgggggtttatctcac 24260985  T
Q  300 ccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgat 357  Q
     || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24260986 tcaagggtaattgaaacataaacttagggaagagttcctagatttccaaaggtatgat 24261043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 24852099 - 24851947
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    ||||||||||| |||| |||| || ||| || ||| ||||||||||||||||| |||| | |||||||||||||| ||||||||||||| ||||||  ||    
T  24852099 ttacctgttttggttgtagaa-tgatagcagtggttaggattctttgaatcccctctattcatttgttggatttatgtaacagtcaagtcttattcgagt 24852001  T
Q  101 taattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaat 154  Q
    |||||||| |||||||| |||||||||||| ||  ||||||||| |||||||||    
T  24852000 taattcacttaagggctatttaagtgatgagttcatgggacgtgttaacctaat 24851947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 15470139 - 15470260
Alignment:
Q  31 gcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgttaattcacgtaagggctctttaagtgatga 130  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||| | ||||||  ||||||||||||||||||| ||| |||||| |    
T  15470139 gcggttaggattctttgaatcccctctatttatttgttggatttacataacagtcaaatcttattcgagttaattcacgtaagggctatttgagtgatta 15470238  T
Q  131 atttgtgggacgtgataaccta 152  Q
     || ||| | ||||||||||||    
T  15470239 gttcgtgaggcgtgataaccta 15470260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 22755837 - 22755929
Alignment:
Q  146 taacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccct 238  Q
    ||||||||| ||||||  || ||||||| ||||| ||||||||| | |||||||||||||||||||||| || ||||||| |||| |||||||    
T  22755837 taacctaatcagttgtcaagctgcatctactgattgcacggtgatccttacgtgtggggtctatactatctcagtcgatttaggtttatccct 22755929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 356
Target Start/End: Complemental strand, 19085958 - 19085799
Alignment:
Q  193 ttacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggttt 292  Q
    |||| |||||||||| |||||| |||||||||| || | ||||| |||   ||||  |||  |||| || |||| ||| ||| | ||||||||||||| |    
T  19085958 ttacatgtggggtct-tactatctcggtcgatttagatatatccatccacctgttgggttgcacctgctgatcacacggtgatctttacgtgtggggtct 19085860  T
Q  293 atctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga 356  Q
    |||| || ||   |||||||||||||||||||| | ||||||||||| ||| ||||||||||||    
T  19085859 atctcactca---gtaattgaaacataaacttaagttagagttcctaaattaccaaaggtatga 19085799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 29263474 - 29263409
Alignment:
Q  37 aggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgtta 102  Q
    ||||||||| ||||||| |||| ||| ||||| || |||| |||||||||||| ||||||||||||    
T  29263474 aggattcttcgaatcccctctatttaattgttagaattacataacagtcaagtcttattcatgtta 29263409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 32417255 - 32417186
Alignment:
Q  21 aatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagtt 90  Q
    ||||||||| | ||| ||||||||| ||||||| |||| ||| |||||||| ||| ||||||||||||||    
T  32417255 aatgttagtggtggttaggattcttcgaatcccctctatttacttgttggaattaagtaacagtcaagtt 32417186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 17171180 - 17171128
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatg 358  Q
    |||| ||||||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  17171180 gtaactgaaacataaacttatggtggagttcctaaatttccaaaagtatgatg 17171128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 19086057 - 19085989
Alignment:
Q  62 atttgttggatttacgtaacagtcaagttttattcatgttaattcacgtaagggctctttaagtgatga 130  Q
    |||||||| |||||   ||||||||||| ||||||| ||||||| ||||||| ||| ||||||||||||    
T  19086057 atttgttgcatttattcaacagtcaagtcttattcaagttaattaacgtaagagctatttaagtgatga 19085989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 26307803 - 26307879
Alignment:
Q  21 aatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattca 97  Q
    ||||||||  ||||| ||||| ||||||||||| |||| |||| |||| || |||| ||||| ||||||||||||||    
T  26307803 aatgttagcggcggttaggatactttgaatcccatctatttatatgttagaattacttaacaatcaagttttattca 26307879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 15544239 - 15544318
Alignment:
Q  20 aaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatg 99  Q
    |||||||||  || || ||||||| | ||||||| |||| ||| ||||| || ||||||||||||||||||| |||||||    
T  15544239 aaatgttagcggcagttaggattcctcgaatcccctctatttaattgttagaattacgtaacagtcaagtttcattcatg 15544318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36175304 - 36175374
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttgga 71  Q
    ||||||||||| |||| ||||| || || |||||| | ||||||||||||| || ||| ||||||||||||    
T  36175304 ttacctgttttggttgtagaaaagtaagaagcggttatgattctttgaatctctcctatttatttgttgga 36175374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 17635449 - 17635537
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagtt 90  Q
    ||||||||||| ||||||||||||||||  ||||| |  ||||||||||||||  | | | |||||||||| |||  |||||||||||||    
T  17635449 ttacctgttttggttgcagaaatgttagccgcggttatcattctttgaatccccccca-tcatttgttggaattaaataacagtcaagtt 17635537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24245471 - 24245419
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatccc 53  Q
    |||||||||||||||||||||| || || | |||| ||||||||| |||||||    
T  24245471 ttacctgttttagttgcagaaaagtaagcaacggttaggattcttcgaatccc 24245419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 12761415 - 12761729
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    ||||||||||| ||||||  |||||||| |||||| | ||||||||||||||| |||| | ||||| |||||||||||||||||||||| ||||||  ||    
T  12761415 ttacctgttttggttgcaacaatgttagcagcggttatgattctttgaatcccctctattcatttgatggatttacgtaacagtcaagtcttattcgagt 12761514  T
Q  101 taattcacgtaagggctctttaagtgatgaatttgtggga--cgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgt 198  Q
    ||||||||||||||||| |||||||||||| || ||||||   ||||||||| |||  ||||   || |||| |||||||||  || |||| ||||| ||    
T  12761515 taattcacgtaagggctatttaagtgatgagttcgtgggatgtgtgataaccgaatcggttggcaagctgcacctgctgatcagacagtgatcattatgt 12761614  T
Q  199 gtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgacccttacgtgtggggtttatctaa 298  Q
    |   |||||||||||| || |||||||||||| ||||| ||||  |||| |||  ||||||||| ||| || |||| ||||| ||||||||||||||| |    
T  12761615 gaaaggtctatactatctcagtcgattaaggtttatccttccgcttgttgagtcgtacctactagtcacactatgatccttatgtgtggggtttatctca 12761714  T
Q  299 cccatgagtaattga 313  Q
    | || | ||||||||    
T  12761715 ctcaagggtaattga 12761729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 20315171 - 20315327
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    |||||||||||  |||||||| ||||||| ||||| ||||||||||||||||| |||| |||||||||| || ||||||| |||||||| ||||||  ||    
T  20315171 ttacctgttttgattgcagaa-tgttagtggcggttaggattctttgaatcccctctatttatttgttgaatctacgtaatagtcaagtcttattcgagt 20315269  T
Q  101 taattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagtt 159  Q
    ||| | ||| ||||| | |||||||||||| || || ||||||||||||||||| ||||    
T  20315270 taaat-acgaaagggatatttaagtgatgagttcgtaggacgtgataacctaatcagtt 20315327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 294
Target Start/End: Original strand, 3775052 - 3775274
Alignment:
Q  62 atttgttggatttacgtaacagtcaagttttattcatgttaattcacgtaagggctctttaagtgatgaatttgtgggacgtgataacctaattagttgt 161  Q
    |||||||||||||| ||||||||||||| ||||||  |||||||||| |||||          |||||| ||||||||||||||||||||||| ||||||    
T  3775052 atttgttggatttatgtaacagtcaagtcttattcgagttaattcacataagg----------tgatgagtttgtgggacgtgataacctaatcagttgt 3775141  T
Q  162 agagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctact 261  Q
      || |||| ||| ||||||||  |||| ||||| ||| ||  |||||||||| ||| |||||| | ||||||||||||| ||||| |||| || || ||    
T  3775142 caagctgcacctgttgatcgcaatgtgatcattatgtgcggtatctatactatctcgatcgatttacgtctatccctccgcatgttgagttgtatctgct 3775241  T
Q  262 aatcatacgatgacccttacgtgtggggtttat 294  Q
     |||| ||| ||| |||||| | ||||||||||    
T  3775242 gatcacacggtgatccttacatatggggtttat 3775274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 14649200 - 14649305
Alignment:
Q  136 tgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatc 235  Q
    ||||||||  ||||||| | ||||||  || |||| ||| |||||||||||||| |  ||||||||||||||||||||| ||||| |||  |||| ||||    
T  14649200 tgggacgttctaacctagtcagttgtcaagctgcacctgttgatcgcacggtgatccatacgtgtggggtctatactatctcggttgatctaggtatatc 14649299  T
Q  236 cctccg 241  Q
    ||||||    
T  14649300 cctccg 14649305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 22526555 - 22526641
Alignment:
Q  21 aatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgttaattca 107  Q
    ||||||||  ||||| | ||||||||||||||  |||| ||| |||||||| |||||||||| |||||| ||||| ||| |||||||    
T  22526555 aatgttagcggcggttatgattctttgaatcctctctatttaattgttggaattacgtaacaatcaagtcttatttatgataattca 22526641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 9052865 - 9052933
Alignment:
Q  21 aatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagt 89  Q
    ||||||| | ||||| ||||||||||||||||| |||| ||||| |||||| |||  ||||||||||||    
T  9052865 aatgttaatggcggttaggattctttgaatcccctctatttattcgttggaattaaataacagtcaagt 9052933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 22173303 - 22173241
Alignment:
Q  176 tgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccct 238  Q
    |||||||||||||| | |||||||  ||||||||||||| ||||| |||  ||||||||||||    
T  22173303 tgatcgcacggtgatccttacgtgcagggtctatactatctcggttgatctaggtctatccct 22173241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 13909192 - 13909265
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctcc 240  Q
    |||| ||| |||||||||||||| | ||| |||||||||||||||| | || || |||| |||| |||||||||    
T  13909192 tgcacctgttgatcgcacggtgatccttaagtgtggggtctatactgtctccgttgatttaggtatatccctcc 13909265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26115833 - 26115789
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctt 45  Q
    ||||||||||| |||||| ||||||||| |||||| |||||||||    
T  26115833 ttacctgttttggttgcataaatgttagcagcggttaggattctt 26115789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5851111 - 5851214
Alignment:
Q  1 ttacctgttttagttgcagaa--atgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcat 98  Q
    |||||||||||| ||||||||  |||||||  ||||| ||||||||| ||||||| |||   || |||||||| |||| |||||||||||| ||||||||    
T  5851111 ttacctgttttaattgcagaataatgttagcggcggttaggattcttcgaatcccctctgtctagttgttggaattacttaacagtcaagtcttattcat 5851210  T
Q  99 gtta 102  Q
    ||||    
T  5851211 gtta 5851214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 14528475 - 14528547
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctc 239  Q
    |||| |||||| ||||||||||| | ||||||| |||||||||||||| ||||| |||  |||||||||||||    
T  14528475 tgcacctgctggtcgcacggtgaaccttacgtgaggggtctatactatctcggttgatctaggtctatccctc 14528547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9642049 - 9642101
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatccc 53  Q
    |||| ||||||||||||||||||||||| |||||| |  ||||||||||||||    
T  9642049 ttacttgttttagttgcagaaatgttagcagcggttaaaattctttgaatccc 9642101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 15238998 - 15239056
Alignment:
Q  31 gcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagt 89  Q
    ||||| ||||||||||||||||| |||| |||||||||||| |||  ||| ||||||||    
T  15238998 gcggttaggattctttgaatcccctctatttatttgttggaattaaataagagtcaagt 15239056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 31288530 - 31288596
Alignment:
Q  21 aatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaa 87  Q
    ||||||||  ||||| |||||| |||||||||| |||| ||| |||||||| ||| |||||||||||    
T  31288530 aatgttagcggcggttaggattatttgaatcccctctatttaattgttggaattatgtaacagtcaa 31288596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 24905100 - 24905157
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatgtccat 363  Q
    ||||||||||||||||||||   |||| |||||| ||||| |||||||||||| ||||    
T  24905100 gtaattgaaacataaacttaaattagaattcctaaatttctaaaggtatgatgaccat 24905157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 34497448 - 34497504
Alignment:
Q  164 agatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggt 220  Q
    |||||||  |||||||| |||| ||| | |||||||||||||||||||||| |||||    
T  34497448 agatgcacatgctgatcacacgatgatccttacgtgtggggtctatactatctcggt 34497504  T

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Target: scaffold0622 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 1417 - 1304
Alignment:
Q  176 tgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccggatgttaagttatacctactaatcatacgatgac 275  Q
    |||| ||| ||||| | ||| |||||||||||||| ||| ||| |||||| |||||||||||| |  ||||| ||||  |||||||  |||||||||||     
T  1417 tgattgcatggtgatccttatgtgtggggtctatattatctcgatcgatttaggtctatccct-ctaatgttgagttccacctactggtcatacgatgat 1319  T
Q  276 ccttacgtgtggggt 290  Q
    |||||||||||||||    
T  1318 ccttacgtgtggggt 1304  T

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Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 168092 - 167987
Alignment:
Q  136 tgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatc 235  Q
    ||||||||  ||||||| | ||||||  || |||| ||| |||||||||||||| |  ||||||||||||||||||||| ||||| |||  |||| ||||    
T  168092 tgggacgttctaacctagtcagttgtcaagctgcacctgttgatcgcacggtgatccatacgtgtggggtctatactatctcggttgatctaggtatatc 167993  T
Q  236 cctccg 241  Q
    ||||||    
T  167992 cctccg 167987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 23056071 - 23055995
Alignment:
Q  21 aatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattca 97  Q
    ||||||||  ||||| ||||||||| ||||||||| |  |||||||||||| |||| |||||||||||| |||||||    
T  23056071 aatgttagcggcggttaggattcttcgaatcccttttttttatttgttggaattacttaacagtcaagtcttattca 23055995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 38083893 - 38083946
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggt 220  Q
    ||||||||||||| ||||||||| | ||||||| |||||||||||||| |||||    
T  38083893 tgcatctgctgattgcacggtgatccttacgtgcggggtctatactatctcggt 38083946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 21325644 - 21325748
Alignment:
Q  136 tgggacgtgataacctaattagttgtagagatgcatctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatc 235  Q
    ||||||||  |||||||||| |||||  || ||||  || ||||| ||| |||| | ||||||| |||||||||||||| ||||| ||||  ||||||||    
T  21325644 tgggacgttttaacctaattggttgtcaagttgcacatgttgatcacacagtgatccttacgtgcggggtctatactatctcggttgatttcggtctatc 21325743  T
Q  236 cctcc 240  Q
    |||||    
T  21325744 cctcc 21325748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 21303282 - 21303211
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggat 72  Q
    |||| |||||| |||||||||| || || |||||| |||||| ||||||||||  ||| |||||||||||||    
T  21303282 ttacttgttttggttgcagaaaagtaagcagcggttaggattatttgaatcccccctatttatttgttggat 21303211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 20398090 - 20398140
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga 356  Q
    |||||||||||||| |||||   ||||||||||| ||||||||||||||||    
T  20398090 gtaattgaaacatatacttaaattagagttcctaaatttccaaaggtatga 20398140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 821149 - 821100
Alignment:
Q  304 gagtaattgaaacataaacttagggtagagttcctagatttccaaaggta 353  Q
    ||||||||||||||||||||||   |||||||| || |||||||||||||    
T  821149 gagtaattgaaacataaacttaaattagagttcgtaaatttccaaaggta 821100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20023480 - 20023423
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttcta 58  Q
    ||||| ||||| |||||||||| || |||||| || ||||||||||||||||| ||||    
T  20023480 ttaccagttttggttgcagaaaagtaagtagcagttaggattctttgaatcccctcta 20023423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8143785 - 8143864
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaac 81  Q
    ||||||||||| |||||||||| || || | |||| ||||||||| |||||||  ||| |||||||||||| ||| |||||    
T  8143785 ttacctgttttggttgcagaaa-gtaagcaacggttaggattcttggaatcccccctatttatttgttggaattaagtaac 8143864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 27418692 - 27418742
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga 356  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||    
T  27418692 gtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatga 27418742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 27419838 - 27419888
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatga 356  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||    
T  27419838 gtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatga 27419888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 9239348 - 9239412
Alignment:
Q  37 aggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgtta 102  Q
    ||||||||||||||||| | || ||| |||||||| |||||||||| |||||| ||||||||||||    
T  9239348 aggattctttgaatcccct-tatttaattgttggaattacgtaacaatcaagtattattcatgtta 9239412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 29849673 - 29849738
Alignment:
Q  176 tgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 241  Q
    |||||||||||||  | ||||||||||||||||| |||| ||||| |||  |||||||||||||||    
T  29849673 tgatcgcacggtgctccttacgtgtggggtctatgctatctcggttgatctaggtctatccctccg 29849738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 19287500 - 19287597
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatccct-tctacttatttgttggatttacgtaacagtcaagttttattcat 98  Q
    |||||||||||  |||||||| |||||| || ||| |||||||||| ||||||  |||| ||| ||||| ||||||||||| |||| ||| ||||||||    
T  19287500 ttacctgttttcattgcagaa-tgttagcagtggttaggattcttttaatccccctctatttaattgttagatttacgtaaaagtctagtcttattcat 19287597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 45553300 - 45553384
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaa 87  Q
    ||||||||||| |||||||||  ||||| |||||| |||||||||||||||||  ||| | |||||||||| |||  ||||||||||    
T  45553300 ttacctgttttggttgcagaac-gttagcagcggttaggattctttgaatccc-cctattcatttgttggaattatttaacagtcaa 45553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 20174396 - 20174327
Alignment:
Q  172 ctgctgatcgcacggtgaccattacgtgtggggtctatactatatcggtcgattaaggtctatccctccg 241  Q
    |||||||| |||| |||| | ||||||||  |||||||||||| ||||| |||  |||||||||||||||    
T  20174396 ctgctgattgcacagtgatccttacgtgtaaggtctatactatctcggttgatctaggtctatccctccg 20174327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 21078251 - 21078202
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatg 355  Q
    |||||||||||||||||||| | | | ||||||| |||||||||||||||    
T  21078251 gtaattgaaacataaacttaagtttgtgttcctaaatttccaaaggtatg 21078202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 26291542 - 26291591
Alignment:
Q  306 gtaattgaaacataaacttagggtagagttcctagatttccaaaggtatg 355  Q
    |||||| |||||||||||||   ||||||||||| |||||||||||||||    
T  26291542 gtaattaaaacataaacttaaattagagttcctaaatttccaaaggtatg 26291591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 28928980 - 28929020
Alignment:
Q  167 tgcatctgctgatcgcacggtgaccattacgtgtggggtct 207  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  28928980 tgcacctgctgatcgcacggtgatccttacgtgtggggtct 28929020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 45621790 - 45621722
Alignment:
Q  21 aatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagt 89  Q
    ||||||||  ||||| | ||||||||||||||| |||| | |||||||||| |||  ||||||||||||    
T  45621790 aatgttagcggcggttaagattctttgaatcccctctattcatttgttggaattaattaacagtcaagt 45621722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 15393 - 15293
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttctacttatttgttggatttacgtaacagtcaagttttattcatgt 100  Q
    |||||||||||  |||||||| ||||||   |||| ||||||||| ||||| | |||||||  |||||||| |||  |||||||||||| ||||||||||    
T  15393 ttacctgttttgattgcagaa-tgttagcgacggttaggattcttcgaatctcctctacttggttgttggaattatttaacagtcaagtcttattcatgt 15295  T
Q  101 ta 102  Q
    ||    
T  15294 ta 15293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 602 - 654
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatccc 53  Q
    ||||||||||| |||||||||| || || |||||| ||||||||| |||||||    
T  602 ttacctgttttggttgcagaaaagtaagcagcggttaggattcttcgaatccc 654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21436 - 21492
Alignment:
Q  1 ttacctgttttagttgcagaaatgttagtagcggtcaggattctttgaatcccttct 57  Q
    ||||||||||| ||| |||||| || ||||||| | ||||||||| |||||||||||    
T  21436 ttacctgttttggtttcagaaaagtaagtagcgattaggattcttcgaatcccttct 21492  T

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