View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_low_14 (Length: 323)
Name: NF2853_1D_low_14
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_14 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 54544186 - 54543885
Alignment:
| Q |
1 |
tcttttagttttttagtttcaaattcgttcttaatcacttactcttaaagcttattaggtcttgccatcatttaatctaannnnnnnccctctaattcta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |
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| T |
54544186 |
tcttttagttttttagtttcaaattcgttcttaatcacttactcttaaagcttattaggtcttgctatcacttaatctaatttttttccctctaattcta |
54544087 |
T |
|
| Q |
101 |
ttgcattaattgctaatcactttaatcctnnnnnnntttccctctttctatttgttaaatttgaatttcaaattttgccttgtcatttgttattttccct |
200 |
Q |
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|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54544086 |
ttgcattaattgctaatcactttaatcttaaaaaaatttccctctttctatttgttaaatttgaatttcaaattttgccttgtcatttgttattttccct |
54543987 |
T |
|
| Q |
201 |
ctactttgtgtgcgttaactgaggcttgattttagcactattagttggcccttgcattgtaaaccaaagcaaaaattcagtctccatctttctctttctc |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54543986 |
ctactttgtgtgcgttaattgaggcttgattttagcactattagttggcccttgaattgtaaaccaaagcaaaaattcagtctccatctttctctttctc |
54543887 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
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|
| T |
54543886 |
tt |
54543885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 28688383 - 28688459
Alignment:
| Q |
34 |
atcacttactcttaaagcttattaggtcttgccatcatttaatctaannnnnnnccctctaattctattgcattaatt |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| |
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| T |
28688383 |
atcacttactcttaaagcttattaggtcttgccatcacttaacctaa-ttttttccctctaattctattgcattaatt |
28688459 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 2743238 - 2743209
Alignment:
| Q |
32 |
taatcacttactcttaaagcttattaggtc |
61 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
2743238 |
taatcacttactcttaaagcttattaggtc |
2743209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 41866922 - 41866811
Alignment:
| Q |
138 |
ttccctctttctatttgttaaatttgaatttcaaattttgccttgtcatttgttattttccctctactttgtgtgcgttaactgaggcttgattttagca |
237 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||| |||| |||||||| |
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| T |
41866922 |
ttccctccttctatttgttaagtttgaatttcaaactttgccttgcaatttgttattttccctctacttcatgtgcattaactgagccttggttttagca |
41866823 |
T |
|
| Q |
238 |
ctattagttggc |
249 |
Q |
| |
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|||||||||||| |
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| T |
41866822 |
ctattagttggc |
41866811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 23487191 - 23487360
Alignment:
| Q |
35 |
tcacttactcttaaagcttattaggtcttgccatcatttaatctaannnnnnnccctctaattctattgcattaattgctaatcactttaatcctnnnnn |
134 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| || | |||| |||| |||||||||||||| |||||||||||||||| |||| ||| |
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| T |
23487191 |
tcacttattcttaaagcttattaggtcatgctattagttaacctaatttttt-ccctctaattctatgtcattaattgctaatcaacttaaccctaaaaa |
23487289 |
T |
|
| Q |
135 |
nntttccctctttctatttgttaaatttgaatttcaaattttgccttgtcatttgttattttccctctact |
205 |
Q |
| |
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|||| ||| || || |||||||||||||||||||| |||| |||| || ||||||| |||||| |||| |
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| T |
23487290 |
tatttctctcattttacatgttaaatttgaatttcaaaatttggcttgacaattgttatattccctatact |
23487360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 23485797 - 23485849
Alignment:
| Q |
153 |
tgttaaatttgaatttcaaattttgccttgtcatttgttattttccctctact |
205 |
Q |
| |
|
|||||||||||||||||||| |||| |||| || ||||||| |||||| |||| |
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| T |
23485797 |
tgttaaatttgaatttcaaaatttggcttgacaattgttatattccctatact |
23485849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 5312 - 5238
Alignment:
| Q |
35 |
tcacttactcttaaagcttattaggtcttgccatcatttaatctaannnnnnnccctctaattctattgcattaatt |
111 |
Q |
| |
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||||||| |||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||| |
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| T |
5312 |
tcacttattcttaaagcttattaggtcttgacattacttaatctaa--tttttccctctaattctattgcattaatt |
5238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 21805457 - 21805408
Alignment:
| Q |
153 |
tgttaaatttgaatttcaaattttgccttgtcatttgttattttccctct |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||||||||||||| |
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| T |
21805457 |
tgttaaatttgaatttcaaatttttgcttcacaattgttattttccctct |
21805408 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 21805567 - 21805538
Alignment:
| Q |
32 |
taatcacttactcttaaagcttattaggtc |
61 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
21805567 |
taatcacttactcttaaagcttattaggtc |
21805538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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