View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_1D_low_18 (Length: 296)

Name: NF2853_1D_low_18
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_1D_low_18
NF2853_1D_low_18
[»] chr6 (3 HSPs)
chr6 (30-294)||(5539888-5540152)
chr6 (34-286)||(5550672-5550919)
chr6 (147-216)||(34589807-34589876)
[»] chr3 (3 HSPs)
chr3 (153-227)||(15801456-15801529)
chr3 (143-228)||(15801699-15801784)
chr3 (147-230)||(26936779-26936860)
[»] chr1 (5 HSPs)
chr1 (143-228)||(38474803-38474888)
chr1 (170-228)||(4557003-4557061)
chr1 (145-202)||(12287503-12287560)
chr1 (143-208)||(5085820-5085885)
chr1 (143-211)||(46631260-46631328)
[»] chr2 (8 HSPs)
chr2 (143-227)||(41513781-41513865)
chr2 (143-216)||(8951368-8951441)
chr2 (147-224)||(2420000-2420077)
chr2 (143-227)||(33459162-33459246)
chr2 (143-223)||(42510694-42510774)
chr2 (168-223)||(38125395-38125450)
chr2 (228-283)||(45209490-45209545)
chr2 (194-227)||(41066389-41066422)
[»] chr8 (3 HSPs)
chr8 (148-227)||(13054302-13054381)
chr8 (166-216)||(11567573-11567623)
chr8 (150-205)||(37384734-37384789)
[»] chr5 (1 HSPs)
chr5 (143-211)||(35138563-35138631)
[»] chr4 (1 HSPs)
chr4 (143-227)||(20642336-20642420)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 294
Target Start/End: Complemental strand, 5540152 - 5539888
Alignment:
Q  30 gaacctgtgtagagtaagatttcactacttttgatatatgattttcttctaaacgggtcggtgaattaactccctcaaatttgatattatatattttagt 129  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5540152 gaacctgtatagagtaagatttcactacttttgatatatgattttcttctaaacgggtcggtgaattaactccctcaaatttgatattatatattttagt 5540053  T
Q  130 ccttgaaattgtaaagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5540052 ccttgaaattgtaaagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcga 5539953  T
Q  230 aattaacattatacactcacacatttcctttttctgtgtggttacagtccaagtgcgccgaattt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5539952 aattaacattatacactcacacatttcctttttctgtgtggttacagtccaagtgcgccgaattt 5539888  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 34 - 286
Target Start/End: Original strand, 5550672 - 5550919
Alignment:
Q  34 ctgtgtagagtaagatttcactacttttgatatatgattttcttctaaacgggtcggtgaattaactccctcaaatttgatattatatattttagtcctt 133  Q
    |||| ||||||||||| |||||||| ||||||||| |||| ||||||| ||||| ||| |||  | |||||||||||||||||| |  | |||||| |||    
T  5550672 ctgtatagagtaagatatcactactcttgatatataatttccttctaagcgggttggtcaatgtagtccctcaaatttgatattttgcactttagtactt 5550771  T
Q  134 gaaattgtaaagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcgaaatt 233  Q
    |||||||||| ||||  |||||||| |||   |||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  5550772 gaaattgtaaggggatgaaattgcttttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctatttactcgaaatt 5550871  T
Q  234 aacattatacactcacacatttcctttttctgtgtggttacagtccaagtgcg 286  Q
    ||   ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5550872 aa---tatacact--cacatttcctttttctgtgtggttacagtccaagtgcg 5550919  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 34589876 - 34589807
Alignment:
Q  147 gactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatg 216  Q
    ||||||||||||| |||||||| |||||||| | |||| || ||||  |||||||| || ||||||||||    
T  34589876 gactaaattgctagttcacaaaattgagggactaaatttaccgaccaatacaattttaaggactaaaatg 34589807  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 15801529 - 15801456
Alignment:
Q  153 attgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 227  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||||||| |||||||||||    
T  15801529 attgctatttca-aaatttgagggattgaattgaccgaccgttacaatttgaaagactaaaatatctatttactc 15801456  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 15801699 - 15801784
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcg 228  Q
    ||||||| ||||||| || |  ||||||||||| |   ||| ||| |||| |||||||||||| ||||||||||||||||||||||    
T  15801699 aagggacaaaattgcgatcttgcaaatttgaggaacaaaatcgaccgacctttacaatttcaaggactaaaatgtctatttactcg 15801784  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 26936860 - 26936779
Alignment:
Q  147 gactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcgaa 230  Q
    |||| |||||||||||  ||||||| ||||| |||||  |  |||||||| ||| |||| ||||||||||| ||||||||||||    
T  26936860 gactgaattgctattttgcaaatttcagggactgaatcaa--gacccttaaaatgtcaaagactaaaatgtttatttactcgaa 26936779  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 38474803 - 38474888
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcg 228  Q
    ||||||||||||||||||||| ||||||| ||||| | |||||||   || |||||||||||| ||||||||||| ||||||||||    
T  38474803 aagggactaaattgctatttctcaaattttagggactaaattgaccacccgttacaatttcaaggactaaaatgtatatttactcg 38474888  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 4557061 - 4557003
Alignment:
Q  170 ttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcg 228  Q
    |||||||||| ||||||| |||||||||||||||||  |||| |||||| |||||||||    
T  4557061 ttgagggattaaattgaccgacccttacaatttcaagaactataatgtcaatttactcg 4557003  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 12287503 - 12287560
Alignment:
Q  145 gggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaattt 202  Q
    |||||||||||||||||| |||||||||||||||| |||| ||  || ||||||||||    
T  12287503 gggactaaattgctatttaacaaatttgagggattaaattaaccaactcttacaattt 12287560  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 5085885 - 5085820
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatga 208  Q
    |||||||||||||| ||||||| ||||| |||||| || ||||||  | || ||||||||||||||    
T  5085885 aagggactaaattgatatttcataaattcgagggactggattgacccaaccgtacaatttcaatga 5085820  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 46631328 - 46631260
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgacta 211  Q
    ||||||||||| | ||| ||| |||||||||  |||| ||||||| |||||||| |||||||| |||||    
T  46631328 aagggactaaaatactaattcgcaaatttgaaagattaaattgaccgacccttaaaatttcaaggacta 46631260  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 41513865 - 41513781
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 227  Q
    |||||||||| |||||||||  ||||||||| ||| | ||||| ||||||||| ||| |||| ||||||||||| ||||||||||    
T  41513865 aagggactaacttgctattttgcaaatttgaaggactaaattggctgacccttgcaaattcagtgactaaaatgcctatttactc 41513781  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 8951368 - 8951441
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatg 216  Q
    |||||||||| |||||||||||||||||||  ||| | ||||||| |||||||| |||||||| | ||||||||    
T  8951368 aagggactaatttgctatttcacaaatttggaggactaaattgacagacccttataatttcaaggtctaaaatg 8951441  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 2420000 - 2420077
Alignment:
Q  147 gactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattta 224  Q
    ||||||||||||||||||||||||||||| | ||| || |||||   |||||||||| | |||||||||  |||||||    
T  2420000 gactaaattgctatttcacaaatttgaggaactgagttaactgattgttacaatttctaggactaaaatacctattta 2420077  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 33459246 - 33459162
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 227  Q
    |||||||| ||||||||||||| |||| ||||| | | |||| || | |  |||||||||||| |||||||||||| ||||||||    
T  33459246 aagggactgaattgctatttcaaaaatatgaggaactaaattaaccgcctgttacaatttcaaggactaaaatgtcgatttactc 33459162  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 42510774 - 42510694
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattt 223  Q
    ||||||||||| | ||||||| || |||| | ||| | ||||||| |||| |||||||||||| |||||||||| ||||||    
T  42510774 aagggactaaactcctatttcgcagatttcaaggactaaattgaccgacctttacaatttcaaggactaaaatgcctattt 42510694  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 38125395 - 38125450
Alignment:
Q  168 atttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctattt 223  Q
    |||| ||||||||||||||| |||| ||||||||||||  | ||||||||||||||    
T  38125395 atttcagggattgaattgaccgaccattacaatttcaaatattaaaatgtctattt 38125450  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 45209545 - 45209490
Alignment:
Q  228 gaaattaacattatacactcacacatttcctttttctgtgtggttacagtccaagt 283  Q
    |||||||| ||||||||||||||  |||||||||  |||||||||||||| |||||    
T  45209545 gaaattaatattatacactcacatgtttccttttcatgtgtggttacagttcaagt 45209490  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 41066422 - 41066389
Alignment:
Q  194 ttacaatttcaatgactaaaatgtctatttactc 227  Q
    ||||||||||||||||||||||| ||||||||||    
T  41066422 ttacaatttcaatgactaaaatgcctatttactc 41066389  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 13054381 - 13054302
Alignment:
Q  148 actaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 227  Q
    ||||||||||||||||||| |||||||||| | ||||||| | |||||  |||||||| || ||||||| ||||||||||    
T  13054381 actaaattgctatttcacatatttgagggactaaattgaccggcccttgaaatttcaacgaataaaatgcctatttactc 13054302  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 11567623 - 11567573
Alignment:
Q  166 aaatttgagggattgaattgactgacccttacaatttcaatgactaaaatg 216  Q
    |||||||||||| | ||||||| ||||||||||||||||| ||||||||||    
T  11567623 aaatttgagggactaaattgaccgacccttacaatttcaaggactaaaatg 11567573  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 37384789 - 37384734
Alignment:
Q  150 taaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaa 205  Q
    |||||||| ||||  ||||||||||||| | |||||||||||| ||||||||||||    
T  37384789 taaattgcaattttgcaaatttgagggactaaattgactgacctttacaatttcaa 37384734  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 35138563 - 35138631
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgacta 211  Q
    ||||||||||||||||||||| |||||||||   | | ||||||| || ||||| |||||||| |||||    
T  35138563 aagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggacta 35138631  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 20642420 - 20642336
Alignment:
Q  143 aagggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactc 227  Q
    |||||||| ||||||||| |  |||||||||||||   |||||| ||||||||||||||| || || || |||||  ||||||||    
T  20642420 aagggactcaattgctatgttgcaaatttgagggacgaaattgattgacccttacaatttgaaggattagaatgttgatttactc 20642336  T

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