View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_1D_low_24 (Length: 255)

Name: NF2853_1D_low_24
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_1D_low_24
NF2853_1D_low_24
[»] chr7 (19 HSPs)
chr7 (119-240)||(34231170-34231291)
chr7 (119-240)||(29114097-29114218)
chr7 (119-226)||(20037562-20037670)
chr7 (120-240)||(24752890-24753010)
chr7 (119-233)||(20047686-20047801)
chr7 (119-233)||(18654387-18654503)
chr7 (119-240)||(4076744-4076867)
chr7 (119-233)||(7459226-7459340)
chr7 (27-107)||(39321119-39321201)
chr7 (51-106)||(44207610-44207665)
chr7 (28-107)||(16492099-16492182)
chr7 (119-183)||(23397267-23397331)
chr7 (57-106)||(35729510-35729559)
chr7 (51-95)||(36856520-36856564)
chr7 (49-103)||(3408164-3408218)
chr7 (57-107)||(45174571-45174621)
chr7 (137-213)||(28060066-28060142)
chr7 (119-185)||(10282425-10282492)
chr7 (119-198)||(46177725-46177804)
[»] chr5 (14 HSPs)
chr5 (119-240)||(4416248-4416369)
chr5 (119-244)||(34874983-34875107)
chr5 (119-215)||(6048707-6048804)
chr5 (119-233)||(4922705-4922819)
chr5 (119-185)||(27895376-27895442)
chr5 (119-223)||(8891966-8892071)
chr5 (119-233)||(20209274-20209389)
chr5 (57-107)||(28273446-28273496)
chr5 (119-223)||(7001327-7001432)
chr5 (51-107)||(33338317-33338373)
chr5 (51-106)||(5108483-5108538)
chr5 (119-182)||(40089807-40089872)
chr5 (57-107)||(8213092-8213142)
chr5 (58-107)||(24397463-24397512)
[»] chr4 (26 HSPs)
chr4 (119-240)||(30274360-30274482)
chr4 (119-240)||(18107104-18107225)
chr4 (119-240)||(34322867-34322988)
chr4 (119-240)||(42822915-42823036)
chr4 (119-240)||(449522-449643)
chr4 (119-234)||(19164457-19164572)
chr4 (119-240)||(53487501-53487622)
chr4 (119-240)||(42777710-42777830)
chr4 (119-240)||(52741386-52741506)
chr4 (119-240)||(31863737-31863858)
chr4 (119-240)||(12881233-12881355)
chr4 (119-240)||(34005365-34005486)
chr4 (119-241)||(1844804-1844928)
chr4 (119-240)||(55854278-55854386)
chr4 (119-233)||(10563864-10563978)
chr4 (119-233)||(29213535-29213651)
chr4 (119-233)||(53779514-53779630)
chr4 (146-244)||(20395096-20395192)
chr4 (51-107)||(16560074-16560130)
chr4 (52-107)||(49482981-49483036)
chr4 (57-107)||(26805758-26805808)
chr4 (51-107)||(19934543-19934599)
chr4 (51-107)||(31463371-31463427)
chr4 (57-107)||(22665663-22665713)
chr4 (51-107)||(27628840-27628896)
chr4 (26-93)||(55465553-55465621)
[»] chr8 (14 HSPs)
chr8 (119-240)||(8446718-8446839)
chr8 (119-240)||(10583963-10584084)
chr8 (119-223)||(31082172-31082277)
chr8 (137-233)||(45256382-45256476)
chr8 (119-244)||(29470742-29470866)
chr8 (119-212)||(17658303-17658397)
chr8 (122-233)||(26030965-26031077)
chr8 (119-182)||(10267576-10267640)
chr8 (51-107)||(24286471-24286527)
chr8 (52-107)||(10636045-10636100)
chr8 (170-223)||(23679687-23679740)
chr8 (119-185)||(36156625-36156692)
chr8 (25-101)||(36055066-36055145)
chr8 (57-106)||(40451891-40451940)
[»] chr2 (16 HSPs)
chr2 (119-240)||(3000296-3000417)
chr2 (119-240)||(7075583-7075704)
chr2 (119-233)||(9393007-9393122)
chr2 (51-107)||(36402439-36402495)
chr2 (119-163)||(1379570-1379614)
chr2 (24-107)||(6084650-6084737)
chr2 (126-233)||(24313978-24314086)
chr2 (25-106)||(9991519-9991604)
chr2 (119-233)||(18704348-18704464)
chr2 (50-107)||(3095117-3095174)
chr2 (119-198)||(22295920-22296000)
chr2 (152-233)||(30273503-30273585)
chr2 (57-107)||(41464266-41464316)
chr2 (179-240)||(1379614-1379674)
chr2 (63-107)||(40356405-40356449)
chr2 (57-107)||(32354807-32354857)
[»] chr1 (23 HSPs)
chr1 (119-240)||(17707467-17707588)
chr1 (119-240)||(40292633-40292753)
chr1 (119-240)||(9903813-9903934)
chr1 (119-240)||(10722510-10722629)
chr1 (119-234)||(30111478-30111593)
chr1 (119-240)||(49968797-49968919)
chr1 (119-217)||(10711675-10711773)
chr1 (119-228)||(25592034-25592143)
chr1 (119-185)||(1395037-1395103)
chr1 (119-233)||(41061699-41061814)
chr1 (119-199)||(47107253-47107334)
chr1 (26-107)||(26060136-26060221)
chr1 (119-223)||(41181683-41181788)
chr1 (51-107)||(48033876-48033932)
chr1 (57-106)||(30111751-30111800)
chr1 (51-107)||(37275336-37275392)
chr1 (51-106)||(39873395-39873451)
chr1 (119-185)||(12173676-12173743)
chr1 (52-107)||(21029295-21029350)
chr1 (119-182)||(47586791-47586856)
chr1 (62-106)||(38680983-38681027)
chr1 (57-107)||(2351298-2351348)
chr1 (51-103)||(8903945-8903997)
[»] chr3 (23 HSPs)
chr3 (119-240)||(33121865-33121986)
chr3 (126-240)||(36634916-36635030)
chr3 (119-240)||(11639437-11639558)
chr3 (119-240)||(8695439-8695560)
chr3 (119-240)||(9047326-9047447)
chr3 (119-244)||(25341878-25342004)
chr3 (119-199)||(1764603-1764683)
chr3 (119-223)||(47536740-47536845)
chr3 (119-244)||(26845341-26845467)
chr3 (119-197)||(32233670-32233749)
chr3 (119-233)||(19221599-19221712)
chr3 (119-223)||(32093477-32093582)
chr3 (24-107)||(38611305-38611389)
chr3 (119-185)||(49500936-49501003)
chr3 (119-185)||(43122281-43122348)
chr3 (29-103)||(46055855-46055929)
chr3 (122-175)||(50543693-50543747)
chr3 (119-240)||(24124389-24124513)
chr3 (119-185)||(46664948-46665015)
chr3 (57-107)||(24980127-24980177)
chr3 (57-107)||(38014715-38014765)
chr3 (51-107)||(20499308-20499364)
chr3 (119-147)||(54559076-54559104)
[»] chr6 (8 HSPs)
chr6 (119-234)||(6831485-6831600)
chr6 (119-240)||(17079739-17079860)
chr6 (141-240)||(9199800-9199898)
chr6 (123-212)||(11061430-11061520)
chr6 (119-244)||(26526001-26526127)
chr6 (119-228)||(17874361-17874471)
chr6 (57-107)||(22616849-22616899)
chr6 (57-107)||(6614957-6615007)
[»] scaffold0481 (1 HSPs)
scaffold0481 (119-244)||(1344-1469)
[»] scaffold0007 (1 HSPs)
scaffold0007 (119-240)||(181600-181721)
[»] scaffold0308 (1 HSPs)
scaffold0308 (119-223)||(11550-11655)
[»] scaffold0227 (1 HSPs)
scaffold0227 (119-196)||(8380-8457)
[»] scaffold0765 (1 HSPs)
scaffold0765 (119-227)||(1348-1455)
[»] scaffold0179 (1 HSPs)
scaffold0179 (119-233)||(6997-7113)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 34231170 - 34231291
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34231170 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgccaaaagagctactctacaaatttagagtcatacaaacaac 34231269  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||| ||||||    
T  34231270 caaaacaaaccattatgtgatg 34231291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 29114218 - 29114097
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  29114218 aacaatcaaaaatggaattatattaatcaccaaaagcaactattctagcacaaggtgtgccaaaagagctactctaaaaatttagagtcatacaaacaac 29114119  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    || |||||| ||||||||||||    
T  29114118 cataacaaatcattacgtgatg 29114097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 20037670 - 20037562
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  20037670 aacaatcaaaaatggaatatatattaaccaccaaaagcaactcctctagcataaggtgtgccaaaagaactactttacaaacatagagtcatacaaacaa 20037571  T
Q  218 ccaaaacaa 226  Q
    |||||||||    
T  20037570 ccaaaacaa 20037562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 24752890 - 24753010
Alignment:
Q  120 acaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaacc 219  Q
    |||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||   |||||||||||||||| |    
T  24752890 acaatcaaaaatagaattatattaaccaccaaaagcagctcttgtagcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaacaatc 24752989  T
Q  220 aaaacaaaccattacgtgatg 240  Q
    |||||||||||||||| ||||    
T  24752990 aaaacaaaccattacgcgatg 24753010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 20047801 - 20047686
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| ||||||||||| |||||||| ||||||||||||||| ||||| |||||||||||||||||| ||| | ||||||| |||||||||||||||||    
T  20047801 aacaataaaaaatggaatatatattaaccaccaaaagcaactcctctagtacaaggtgtgccaaaagaactattttacaaacatagagtcatacaaacaa 20047702  T
Q  218 ccaaaacaaaccatta 233  Q
    ||||||||||||||||    
T  20047701 ccaaaacaaaccatta 20047686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 18654503 - 18654387
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| ||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||    
T  18654503 aacaataaaaaatggaatataaattaaccaccaaaagcaactcctctagcacaaggtgtgccaaaagaactactttacaaacacagagtcatacaaacaa 18654404  T
Q  218 ccaaaa-caaaccatta 233  Q
    |||||| ||||||||||    
T  18654403 ccaaaaccaaaccatta 18654387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 4076744 - 4076867
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaa-ctcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaaca 216  Q
    |||||| ||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||  |||| || ||||  ||||||| |||| ||    
T  4076744 aacaataaaaaatggaatatataataatcaccaaaagcaaactcctctagcacaaggtgtgccaaaagaattactttaaaaacaaagagtcagacaagca 4076843  T
Q  217 accaaaacaaaccattacgtgatg 240  Q
     |||||||||||||||| ||||||    
T  4076844 tccaaaacaaaccattaagtgatg 4076867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 7459340 - 7459226
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    ||||| |||||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||||  |||| |||||    |||| |||||||||||    
T  7459340 aacaaacaaaaatggaatatatattaaacaccaaaagcaactcccctagcacaaggtgtgccaaaagaattact-tacaagaacagagccatacaaacaa 7459242  T
Q  218 ccaaaacaaaccatta 233  Q
    ||||||||||||||||    
T  7459241 ccaaaacaaaccatta 7459226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 39321119 - 39321201
Alignment:
Q  27 agggtcttgctaactattgccc--gacaatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||||||| ||||| |  | ||||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  39321119 agggtcttgctaaccattgctcagggcaatggttaaggtaaccaaaattagtagctttacattggaaacaacaatttataaac 39321201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 44207610 - 44207665
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaa 106  Q
    ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  44207610 caatggttaaggtaaccaaaattagtagctttatattggaaacaacaatttataaa 44207665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 16492182 - 16492099
Alignment:
Q  28 gggtcttgctaactattgccc----gacaatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||||||||||| |||||||    | ||||||||||||||||| |||||||||  |||| ||||||||||| |||||||||||    
T  16492182 gggtcttgctaaccattgcccttagggcaatgattaaggtaaccgaaattagtaactttacattggaaacaacaatttataaac 16492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 23397331 - 23397267
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaa 183  Q
    |||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||| ||||    
T  23397331 aacaatcaaaaatggaatatatattaa-caccaaaagaaactcctctagcacaaggtgtgctaaaa 23397267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 35729559 - 35729510
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaa 106  Q
    |||| |||||||||||||||||||||| ||||||||||| ||||||||||    
T  35729559 ttaaagtaaccaaaattagtagttttacattggaaacaataatttataaa 35729510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 36856520 - 36856564
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaa 95  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  36856520 caatgattaaggtaaccaaaattagtaactttatattggaaacaa 36856564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 3408164 - 3408218
Alignment:
Q  49 gacaatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttat 103  Q
    ||||||| |||||||| ||||||||||||| |||| ||||||||||| |||||||    
T  3408164 gacaatggttaaggtagccaaaattagtagctttacattggaaacaacaatttat 3408218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 45174621 - 45174571
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| |||||||||||| |||||||| ||||||||||| |||||||||||    
T  45174621 ttaagataaccaaaattaatagttttacattggaaacaacaatttataaac 45174571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 28060066 - 28060142
Alignment:
Q  137 tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaa 213  Q
    |||||||| ||||||||||||||| ||||||| |||||||| |||| ||| |||| || ||||   |||||||||||    
T  28060066 tatattaaacaccaaaagcaactcctctagcataaggtgtgtcaaatgagttactttaaaaacaatgagtcatacaa 28060142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 10282492 - 10282425
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaaga 185  Q
    ||||| |||||||||||| |||||||| ||| |||| |||||| ||||||||||  ||||||||||||    
T  10282492 aacaagcaaaaatggaatatatattaaccacaaaaaacaactcctctagcacaaaatgtgccaaaaga 10282425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 46177725 - 46177804
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaa 198  Q
    |||||||||||||||||| |||||| | |||||||| |||||| ||||| | ||||||||| ||||||  |||| ||||||    
T  46177725 aacaatcaaaaatggaatatatatt-agcaccaaaaacaactcctctagtataaggtgtgctaaaagaattactttacaaa 46177804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 4416369 - 4416248
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4416369 aacaataaaaaatggaattatataaatcaccaaaagcaactcttctagcacaaggtgtgtcaaaagagctactctacaaacttagagtcatacaaacaac 4416270  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  4416269 caaaacaaaccattacgtgatg 4416248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 34875107 - 34874983
Alignment:
Q  119 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||  | ||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  34875107 aacaatcaaaaatggaatttatattaaccaccaaaagcagcttctgtagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacaaacaa 34875008  T
Q  218 ccaaaacaaaccattacgtgatgtcca 244  Q
     ||||  |||| |||||| ||||||||    
T  34875007 acaaa--aaactattacgcgatgtcca 34874983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 6048707 - 6048804
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaac 215  Q
    |||||| ||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||||  ||||||||||||||    
T  6048707 aacaataaaaaatggaatatatattaaccaccaaaagcaactcctctagcataaggtgtgccaaaagaactactctacaaacacagagtcatacaaac 6048804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 4922705 - 4922819
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||| ||||||  |||| ||||||   ||||||| ||||||||    
T  4922705 aacaatcaaaaatggaatatatattaa-caccaaaagcaactcctctagcataaggtgtgctaaaagaattactttacaaaaacagagtcaaacaaacaa 4922803  T
Q  218 ccaaaacaaaccatta 233  Q
    |||| |||||||||||    
T  4922804 ccaatacaaaccatta 4922819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 27895376 - 27895442
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaaga 185  Q
    |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  27895376 aacaatcaaaaatggaattatattaaccaccaaaagcaactcttttggcacaaggtgtgccaaaaga 27895442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 8891966 - 8892071
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| |||||||| || |||||||| ||||||||||| ||| | |||||||||| |||||||||||||||||||||||||  | ||||||||||||||    
T  8891966 aacaataaaaaatgggatatatattaaccaccaaaagcagctcctatagcacaaggcgtgccaaaagagctactctacaaacacatagtcatacaaacaa 8892065  T
Q  218 ccaaaa 223  Q
     |||||    
T  8892066 acaaaa 8892071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 20209389 - 20209274
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtc-atacaaaca 216  Q
    |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||  |||| ||||||   |||||| | |||||||    
T  20209389 aacaatcaaaaatggaatatatattaa-caccaaaagcaactcctctagcacaaggtgtgctaaaagaattactttacaaaaacagagtcaaaacaaaca 20209291  T
Q  217 accaaaacaaaccatta 233  Q
    ||||| |||||||||||    
T  20209290 accaatacaaaccatta 20209274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 28273496 - 28273446
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28273496 ttaaggtaaccaaaattagtagttttatattggaaacaacaatttataaac 28273446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 7001432 - 7001327
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| |||||||| || |||||||| ||||||||||| ||| | ||||| |||| || ||||||||||||||||||||||  | ||||||||||||||    
T  7001432 aacaataaaaaatgggatatatattaaccaccaaaagcagctcctatagcataaggcgtaccaaaagagctactctacaaacacaaagtcatacaaacaa 7001333  T
Q  218 ccaaaa 223  Q
     |||||    
T  7001332 acaaaa 7001327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 33338373 - 33338317
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  33338373 caatggttaaagtaaccaaaattagtagttttacattggaaacaacaatttataaac 33338317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 5108538 - 5108483
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaa 106  Q
    |||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  5108538 caataattaaggtaaccaaaattagcagttttacattggaaacaacaatttataaa 5108483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 40089807 - 40089872
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagc-aactcttctagcacaaggtgtgccaaa 182  Q
    |||||||||||||| ||| |||||||| |||||||||| ||| | |||||||||||||||||||||    
T  40089807 aacaatcaaaaatgtaatatatattaaccaccaaaagcgaacccctctagcacaaggtgtgccaaa 40089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 8213142 - 8213092
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||||||||||||||| |||| ||  ||||||| |||||||||||    
T  8213142 ttaaggtaaccaaaattagtagctttacatcagaaacaataatttataaac 8213092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 24397463 - 24397512
Alignment:
Q  58 taaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||||||||||||||||| | |||| |||| |||||| |||||||||||    
T  24397463 taaggtaaccaaaattagtggctttagattgaaaacaataatttataaac 24397512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 30274482 - 30274360
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctac-aaacttagagtcatacaaacaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  30274482 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcataagatgtgccaaaagagctactctacaaaacttagagtcatacaaacaa 30274383  T
Q  218 ccaaaacaaaccattacgtgatg 240  Q
    |||||||||||||||||||||||    
T  30274382 ccaaaacaaaccattacgtgatg 30274360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 18107225 - 18107104
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  18107225 aacaataaaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgccaaaagaactactctacaaatttagagtcatacaaacaac 18107126  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  18107125 caaaacaaaccattacgtgatg 18107104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 34322988 - 34322867
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34322988 aacaataaaaaatggaattatataaatcaccaaaaacaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatataaacaac 34322889  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  34322888 caaaacaaaccattacgtgatg 34322867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 42822915 - 42823036
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |     
T  42822915 aacaatcaaaaatggaattatataaatcaccaaaagcaactcttctagcacaaagtgtgccaaaagagctactctacaaacttagagtcatacaaaccat 42823014  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  42823015 caaaacaaaccattacgtgatg 42823036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 449522 - 449643
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  449522 aacaataaaaaatggaattatattaatcacgaaaagcaactcttccagcataagatgtgccaaaagagctactctacaaacttagagtcatacaaacaac 449621  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  449622 caaaacaaaccattacgtgatg 449643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 19164457 - 19164572
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  19164457 aacaatcaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctacaaacatagagtcatacaaacaac 19164556  T
Q  219 caaaacaaaccattac 234  Q
    |||| |||||||||||    
T  19164557 caaagcaaaccattac 19164572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 53487622 - 53487501
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||| | |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||||||||||||    
T  53487622 aacaataagaaatggaattatataaatcacaaaaagcaactcttctagcacaagatgtgccaaaagaattactctacaaacatagagtcatacaaacaac 53487523  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  53487522 caaaacaaaccattacgtgatg 53487501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 42777710 - 42777830
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||| ||    
T  42777710 aacaaacaaaaatggaattataataatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctacaaataaagagtcatacaaaccac 42777809  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    | ||||||||||||||||||||    
T  42777810 c-aaacaaaccattacgtgatg 42777830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 52741506 - 52741386
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||   |||||||||||||||||    
T  52741506 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctataaataaagagtcatacaaacaac 52741407  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    | ||||||||||||| ||||||    
T  52741406 c-aaacaaaccattaagtgatg 52741386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 31863737 - 31863858
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||   ||||| |||||| ||||    
T  31863737 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 31863836  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||| ||||    
T  31863837 caaaacaaaccattacgcgatg 31863858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 12881355 - 12881233
Alignment:
Q  119 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  12881355 aacaatcaacaatggaatttatattaaccaccaaaagcaactcctctagcacaaggtgtaccaaaagagctactctacaaacacagagtcatacaaacaa 12881256  T
Q  218 ccaaaacaaaccattacgtgatg 240  Q
     || || ||||||||||| ||||    
T  12881255 acataaaaaaccattacgcgatg 12881233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 34005365 - 34005486
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||| ||||| ||||||   ||||| |||||| ||||    
T  34005365 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtataaggtgtgccataagaactactttacaaatacagagttatacaaccaac 34005464  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||| ||||    
T  34005465 caaaacaaaccattacgcgatg 34005486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 1844928 - 1844804
Alignment:
Q  119 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| |||||||||||| ||||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  1844928 aacaataaaaaatggaatttatattaaccatcaaaaacaactcctctagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacaaacaa 1844829  T
Q  218 cca-aaacaaaccattacgtgatgt 241  Q
     || ||| ||||||||||| |||||    
T  1844828 acataaaaaaaccattacgcgatgt 1844804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 55854278 - 55854386
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||||||||||||||||||||||||||  ||||||||||             ||||||||||||| ||||||||||||  ||||||||||||||||||    
T  55854278 aacaatcaaaaatggaattatattaatcattaaaagcaact-------------gtgtgccaaaagaactactctacaaatatagagtcatacaaacaac 55854364  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  55854365 caaaacaaaccattacgtgatg 55854386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 10563978 - 10563864
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||||||||||||||| |||||||| |||||||||||||||  |||||| ||||||||||| ||||  |||| |||||    ||||||||||||||||    
T  10563978 aacaatcaaaaatggaatatatattaaacaccaaaagcaactcccctagcataaggtgtgccagaagaattact-tacaagaacagagtcatacaaacaa 10563880  T
Q  218 ccaaaacaaaccatta 233  Q
    ||||||||||||||||    
T  10563879 ccaaaacaaaccatta 10563864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 29213651 - 29213535
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaat-caccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaaca 216  Q
    |||||||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| |  |||| |||||    |||||||||||||||    
T  29213651 aacaatcaaaaatggaatatatattaaaacaccaaaagcaactctcctagtataaggtgtgccaaaataattactttacaagaagagagtcatacaaaca 29213552  T
Q  217 accaaaacaaaccatta 233  Q
    |||||||||||||||||    
T  29213551 accaaaacaaaccatta 29213535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 53779514 - 53779630
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaat-caccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaaca 216  Q
    |||||| ||||||| ||| ||||||||  |||||||||||||||| |||||||||||||||||||||||  |||| |||||    | |||||||||||||    
T  53779514 aacaataaaaaatgaaatatatattaaaacaccaaaagcaactctcctagcacaaggtgtgccaaaagaattactttacaagaacatagtcatacaaaca 53779613  T
Q  217 accaaaacaaaccatta 233  Q
    |||||||||||||||||    
T  53779614 accaaaacaaaccatta 53779630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 20395096 - 20395192
Alignment:
Q  146 caccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaaccaaaacaaaccattacgtgatgtcca 244  Q
    ||||||||||| ||| | ||| |||||||||| |||||||||||||||||||||  |||||||||||||||| ||||  ||||||| ||| ||||||||    
T  20395096 caccaaaagcagctcctgtagtacaaggtgtgtcaaaagagctactctacaaacacagagtcatacaaacaaacaaa--aaaccatcacgcgatgtcca 20395192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 16560130 - 16560074
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  16560130 caatggttaaggtaaccaaaattagtagttttacattggaaacaacaatttataaac 16560074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 49483036 - 49482981
Alignment:
Q  52 aatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||| |||||||||||||||||||||| |||| |||| |||||| |||||||||||    
T  49483036 aatggttaaggtaaccaaaattagtagctttacattgaaaacaacaatttataaac 49482981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 26805808 - 26805758
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||| |||||    
T  26805808 ttaaggtaaccaaaattagtagctttacattggaaacaacaatttttaaac 26805758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 19934599 - 19934543
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| ||||| ||||||||||||||||||||| |||  |||||| |||||||||||    
T  19934599 caatggttaagataaccaaaattagtagttttacattaaaaacaacaatttataaac 19934543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 31463427 - 31463371
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| || ||||||||||||||||||||||||  |||||||||| ||||| |||||    
T  31463427 caatggttgaggtaaccaaaattagtagttttacgttggaaacaacaatttgtaaac 31463371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 22665663 - 22665713
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||||||| ||| |||||||| ||||||||||| ||||| |||||    
T  22665663 ttaaggtaaccaaatttaatagttttacattggaaacaacaatttgtaaac 22665713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 27628840 - 27628896
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| ||| |||||||| ||||||||| |||| |||| |||||| |||||||||||    
T  27628840 caatggttatggtaaccagaattagtagctttacattgaaaacaacaatttataaac 27628896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 55465621 - 55465553
Alignment:
Q  26 aagggtcttgctaactattgcccga-caatgattaaggtaaccaaaattagtagttttatattggaaac 93  Q
    |||||| |||||||||| || |||  ||||| |||||| |||||||| ||||||||||||||| |||||    
T  55465621 aagggttttgctaactaatgtccgggcaatggttaaggaaaccaaaaatagtagttttatattagaaac 55465553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 8446839 - 8446718
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  8446839 aacaatcaaaaatggaattatattaatcatcaaaagcaactcttctggcacaaggtgtgccgaaagagctactctacaaatttagagtcatacaaacaac 8446740  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  8446739 caaaacaaaccattacgtgatg 8446718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 10584084 - 10583963
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  10584084 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaatttaaagtcatacaaacaac 10583985  T
Q  219 caaaacaaaccattacgtgatg 240  Q
     |||||||| ||||||||||||    
T  10583984 taaaacaaatcattacgtgatg 10583963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 31082277 - 31082172
Alignment:
Q  119 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| |||||||||||| ||||||| |||||||| |||||  | ||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  31082277 aacaataaaaaatggaatttatattaaccaccaaaaacaacttatgtagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacaaacaa 31082178  T
Q  218 ccaaaa 223  Q
     |||||    
T  31082177 acaaaa 31082172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 45256476 - 45256382
Alignment:
Q  137 tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaaccaaaacaaaccatta 233  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||| |||||  ||||||  ||||||||||||||||||||||||||||||||    
T  45256476 tatattaaccaccaaaaacaactcctctagcacaaggtgtgccaaaagaactacttcacaaac--agagtcatacaaacaaccaaaacaaaccatta 45256382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 29470866 - 29470742
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| ||||||| ||| |||||||| ||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||  |||||||||||||| |    
T  29470866 aacaataaaaaatgaaatatatattaaccaccaaaagcagctcctgtagcataaggtgtgccaaaagagctactctacaaacacagagtcatacaaacga 29470767  T
Q  218 ccaaaacaaaccattacgtgatgtcca 244  Q
     ||||  ||||||| ||| ||||||||    
T  29470766 acaaa--aaaccatcacgcgatgtcca 29470742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 17658303 - 17658397
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcataca 212  Q
    ||||| |||||||||||| |||||||| ||||||||||| ||| | |||||||||||||||||||||||||||| |||||||  | |||||||||    
T  17658303 aacaaccaaaaatggaatatatattaaccaccaaaagcagctcctgtagcacaaggtgtgccaaaagagctactttacaaacacaaagtcataca 17658397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 26030965 - 26031077
Alignment:
Q  122 aatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtc-atacaaacaacc 219  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||  | || ||| ||   |||||| | ||||||||||    
T  26030965 aatcaaaaatggaatatatattaa-caccaaaagcaactcctctagcacaaggtgtgctaaaagaattgctttaccaaaacagagtcaaaacaaacaacc 26031063  T
Q  220 aaaacaaaccatta 233  Q
    || |||||||||||    
T  26031064 aatacaaaccatta 26031077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 10267576 - 10267640
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaa 182  Q
    |||||| ||||||||||| |||| ||||||||||||  ||||| |||||||||||||||||||||    
T  10267576 aacaataaaaaatggaatatataataatcaccaaaaataactcctctagcacaaggtgtgccaaa 10267640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 24286471 - 24286527
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  24286471 caatggttacggtaaccaaaattagtagttttatattagaaacaataatttctaaac 24286527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 10636100 - 10636045
Alignment:
Q  52 aatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||| |||| ||||||    
T  10636100 aatggttaaggtaatcaaaattagtagttttacattggaaacaataattaataaac 10636045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 23679687 - 23679740
Alignment:
Q  170 aaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaaccaaaa 223  Q
    |||||||||||||| ||||||||||||||   |||||||||||||||| |||||    
T  23679687 aaggtgtgccaaaatagctactctacaaatacagagtcatacaaacaaacaaaa 23679740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 36156625 - 36156692
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaaga 185  Q
    ||||| |||||||| ||| |||||||| ||| ||||| ||||||||||| ||||| ||||||||||||    
T  36156625 aacaagcaaaaatgaaatatatattaaccacaaaaagtaactcttctagtacaagatgtgccaaaaga 36156692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 36055145 - 36055066
Alignment:
Q  25 taagggtcttgctaactattgccc---gacaatgattaaggtaaccaaaattagtagttttatattggaaacaaaaattt 101  Q
    |||||||||||||||| | |||||   || |||| |||| ||||||||||||||||| |||| ||| ||||||| |||||    
T  36055145 taagggtcttgctaaccaatgccctcagataatggttaaagtaaccaaaattagtagctttacattagaaacaacaattt 36055066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 40451891 - 40451940
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaa 106  Q
    ||||| ||| |||||||||||||||||  |||||||||| ||||||||||    
T  40451891 ttaagataatcaaaattagtagttttaagttggaaacaacaatttataaa 40451940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 3000417 - 3000296
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  3000417 aacaataaaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgccaaaagaactactctacaaatttagagtcatacaaacaac 3000318  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  3000317 caaaacaaaccattacgtgatg 3000296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 7075583 - 7075704
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  7075583 aacaataaaaaatggaattatattaatcatcaaaagcaactcttctagcacaaggtgtgccaaaagagctactcaacaaaattagagtcatacaaacaac 7075682  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  7075683 caaaacaaaccattacgtgatg 7075704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 9393007 - 9393122
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| ||||||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||  |||| ||||||| |||||||||||||||||    
T  9393007 aacaataaaaaatgaaatatatattaaccaccaaaagcaactcctctagcacaaggtgtgccaaaagaaatactttacaaacatagagtcatacaaacaa 9393106  T
Q  218 ccaaaacaaaccatta 233  Q
    ||||||||||||||||    
T  9393107 ccaaaacaaaccatta 9393122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 36402439 - 36402495
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36402439 caatgattaaggtaaccaaaattagtagttttatattggaaacaacaatttataaac 36402495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 1379570 - 1379614
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1379570 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttc 1379614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 6084650 - 6084737
Alignment:
Q  24 ttaagggtcttgctaactattgccc----gacaatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||| |||||| |||||||    |||||||||||||||||| ||||||||||| |||| ||||||||||| | |||||||||    
T  6084650 ttaagggtctcgctaaccattgccctcaggacaatgattaaggtaactaaaattagtagctttacattggaaacaatattttataaac 6084737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 24314086 - 24313978
Alignment:
Q  126 aaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtc-atacaaacaaccaaaa 223  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||| ||  |||| ||||||   |||||| | |||||||||||| |    
T  24314086 aaaaatggaatatatattaa-caccaaaagcaactcctctagcacaaggtgtgctaaacgaattactttacaaaaacagagtcaaaacaaacaaccaata 24313988  T
Q  224 caaaccatta 233  Q
    ||||||||||    
T  24313987 caaaccatta 24313978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 9991604 - 9991519
Alignment:
Q  25 taagggtcttgctaactattgccc----gacaatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaa 106  Q
    |||||||||||||||||||||||     | ||||| ||||||||| ||||||||||||||||| |||| |||||| ||||||||||    
T  9991604 taagggtcttgctaactattgcctccagggcaatggttaaggtaatcaaaattagtagttttacattgaaaacaacaatttataaa 9991519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 18704464 - 18704348
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| ||||||||||| |||||||| || |||||||||||| ||||||||||| ||||||||||||  ||||  | | ||  ||||||| |||| |||    
T  18704464 aacaataaaaaatggaatatatattaaccatcaaaagcaactcgtctagcacaagatgtgccaaaagaattactgcaaatacaaagagtcagacaagcaa 18704365  T
Q  218 cc-aaaacaaaccatta 233  Q
    || ||||||||||||||    
T  18704364 ccaaaaacaaaccatta 18704348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 3095174 - 3095117
Alignment:
Q  50 acaatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||| ||||||||||||||||||||| ||||| ||| ||||||| |||||||||||    
T  3095174 acaatggttaaggtaaccaaaattagtacttttacattagaaacaataatttataaac 3095117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 22296000 - 22295920
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaa 198  Q
    |||||||||||||| ||| |||||||| ||  |||||||| || |||| ||||||||||||||||||| ||||| ||||||    
T  22296000 aacaatcaaaaatgaaatatatattaaccattaaaagcaattcctctaacacaaggtgtgccaaaagaactactttacaaa 22295920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 30273503 - 30273585
Alignment:
Q  152 aagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtc-atacaaacaaccaaaacaaaccatta 233  Q
    ||||||||| ||||||||||||||||| ||||||  |||| ||||||   |||||| | |||||||||||| |||||||||||    
T  30273503 aagcaactcctctagcacaaggtgtgctaaaagaattactttacaaaaacagagtcaaaacaaacaaccaatacaaaccatta 30273585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 41464266 - 41464316
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||||||||||||||  |||| ||||||||||| |||||||||||    
T  41464266 ttaaggtaaccaaaattagtatctttacattggaaacaacaatttataaac 41464316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 1379614 - 1379674
Alignment:
Q  179 caaaagagctactctacaaacttagagtcatacaaacaaccaaaacaaaccattacgtgatg 240  Q
    ||||||| ||||||||||||   ||||||| |||||||||| ||||||||||||||||||||    
T  1379614 caaaagaactactctacaaataaagagtcaaacaaacaacc-aaacaaaccattacgtgatg 1379674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 40356405 - 40356449
Alignment:
Q  63 taaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||||||||  |||||||||||||||| |||||||||||    
T  40356405 taaccaaaattagtaactttatattggaaacaacaatttataaac 40356449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 32354857 - 32354807
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||||||||||||||||||| ||||| |||| ||| || |||||||||||    
T  32354857 ttaaggtaaccaaaattagtaattttacattgtaaataataatttataaac 32354807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 17707467 - 17707588
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17707467 aacaatcaaaaaagaaattatattaatcaccacaagcaactcttctagcacaaggtgtgctaaaagagctactctacaaacttagagtcatacaaacaac 17707566  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  17707567 caaaacaaaccattacgtgatg 17707588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 40292753 - 40292633
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||| |||||||||    
T  40292753 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctacaaataaagagtcaaacaaacaac 40292654  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    | ||||||||||||||||||||    
T  40292653 c-aaacaaaccattacgtgatg 40292633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 9903934 - 9903813
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||  |||||||||||||||||    
T  9903934 aacaatcaaaaatggaattatgttaaccaccaaaagcaactcttctagtacaaggtgtgctaaaagaactactctacaaacacagagtcatacaaacaac 9903835  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||| ||||    
T  9903834 caaaacaaaccattacgcgatg 9903813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 10722510 - 10722629
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||  || |||||||||||||||    
T  10722510 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactttacaaa--tacagtcatacaaacaac 10722607  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||| ||||    
T  10722608 caaaacaaaccattacgcgatg 10722629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 30111593 - 30111478
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||    
T  30111593 aacaatcaaaaatggaattatattaatcatcaaaaacaactcttctagcacaaggtgtgccaaaagaactactttacaaccatagagtcatacaaacaac 30111494  T
Q  219 caaaacaaaccattac 234  Q
     ||| |||||||||||    
T  30111493 taaagcaaaccattac 30111478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 49968797 - 49968919
Alignment:
Q  119 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    ||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||| |||||||||||| |||||||  ||||||||||||||||    
T  49968797 aacaatcaaaaatggaatttatattaaccaccaaaagcaacttctctagcacaaggtgtgctaaaagagctactttacaaacacagagtcatacaaacaa 49968896  T
Q  218 ccaaaacaaaccattacgtgatg 240  Q
    ||| || ||||||||||| ||||    
T  49968897 ccataagaaaccattacgcgatg 49968919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 10711773 - 10711675
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||   ||||||||||||||||    
T  10711773 aacaatcaaaaatgaaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaacaa 10711675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 25592143 - 25592034
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||   ||||| |||||| ||||    
T  25592143 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 25592044  T
Q  219 caaaacaaac 228  Q
    ||||||||||    
T  25592043 caaaacaaac 25592034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 1395103 - 1395037
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaaga 185  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  1395103 aacaatcaaaaatggaattatattaaccaccaaaaacaactcttctagcacaaggtgtgccaaaaga 1395037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 41061814 - 41061699
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtc-atacaaaca 216  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||||||||   | |||| | |||||||    
T  41061814 aacaatcaaaaatggaatatatattaa-caccaaaagcaactcttctagcacaaggtgtgctaaaagaattactctacaaaaacatagtcaaaacaaaca 41061716  T
Q  217 accaaaacaaaccatta 233  Q
    ||||| |||||||||||    
T  41061715 accaatacaaaccatta 41061699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 47107334 - 47107253
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaac 199  Q
    |||||||||||||| ||| ||||||||  |||||||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  47107334 aacaatcaaaaatgaaatatatattaactaccaaaagcaactcctctagtacaaggtgtgccaaaagaactactctacaaac 47107253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 26060136 - 26060221
Alignment:
Q  26 aagggtcttgctaactattgccc----gacaatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||||||||||||||||| |||    | ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  26060136 aagggtcttgctaactatttccctcatggcaatggttaaggtaaccaaaattagtagttttacattggaaacaacaatttataaac 26060221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 41181683 - 41181788
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| |||||||| || |||||||| ||||||||||| ||| | |||||||| | ||| ||||||||||||| |||||||  | ||||||||||||||    
T  41181683 aacaataaaaaatgggatatatattaaccaccaaaagcagctcctatagcacaatgcgtgtcaaaagagctactatacaaacacatagtcatacaaacaa 41181782  T
Q  218 ccaaaa 223  Q
     |||||    
T  41181783 acaaaa 41181788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 48033876 - 48033932
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  48033876 caatggttaaggtaaccaaaattagtagctttacattggaaacaacaatttataaac 48033932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 30111751 - 30111800
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaa 106  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  30111751 ttaaggtaaccaaaattagtagttttatattagaaacaacaatttgtaaa 30111800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 37275392 - 37275336
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| ||||||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  37275392 caatgcttaaggtaatcaaaattattagttttacattggaaacaacaatttataaac 37275336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 39873451 - 39873395
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagtttt-atattggaaacaaaaatttataaa 106  Q
    |||||||||||||||||||||||| ||||||| | ||||||||||| ||||||||||    
T  39873451 caatgattaaggtaaccaaaattaatagttttaacattggaaacaacaatttataaa 39873395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 12173676 - 12173743
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaaga 185  Q
    ||||| |||||||||||| |||||||| ||| |||| |||||| ||||||||||| ||||||||||||    
T  12173676 aacaaacaaaaatggaatatatattaaccacaaaaaacaactcctctagcacaagatgtgccaaaaga 12173743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 21029295 - 21029350
Alignment:
Q  52 aatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||| |||||||||| |||||||||||||||| |||| |||||| |||||||||||    
T  21029295 aatgtttaaggtaacaaaaattagtagttttacattgaaaacaataatttataaac 21029350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 47586791 - 47586856
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaa-ctcttctagcacaaggtgtgccaaa 182  Q
    ||||| |||||||||||| |||||||| |||||||||||| ||| |||| ||||||||||||||||    
T  47586791 aacaaacaaaaatggaatatatattaaccaccaaaagcaaactcctctaacacaaggtgtgccaaa 47586856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 38681027 - 38680983
Alignment:
Q  62 gtaaccaaaattagtagttttatattggaaacaaaaatttataaa 106  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||||    
T  38681027 gtaaccaaaattattagttttacattggaaacaacaatttataaa 38680983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 2351348 - 2351298
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||||||||||| ||| |||| ||||||||||| ||||| |||||    
T  2351348 ttaaggtaaccaaaattaataggtttacattggaaacaacaatttgtaaac 2351298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 8903945 - 8903997
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttat 103  Q
    |||| ||||||||||| ||||||| ||| ||||||||| |||||| |||||||    
T  8903945 caatcattaaggtaacaaaaattaatagctttatattgaaaacaataatttat 8903997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 33121986 - 33121865
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  33121986 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctggcataaggtgtgtcaaaagagctactctacaaatatagagtcatacaaacaac 33121887  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||    
T  33121886 caaaacaaaccattacgtgatg 33121865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 36634916 - 36635030
Alignment:
Q  126 aaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaaccaaaaca 225  Q
    ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  36634916 aaaaatggaattatattaatcaccaaaagcaactcttttagtataaggtgtgccagaagaactactctacaaacatagagtcatacaaacaaccaaaaca 36635015  T
Q  226 aaccattacgtgatg 240  Q
    |||||||||||||||    
T  36635016 aaccattacgtgatg 36635030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 11639437 - 11639558
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||| ||||||   |||||||||||| ||||    
T  11639437 aacaatcaaaaatggaattatattaaccaccaaaatcaactcttcttgcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaccaac 11639536  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||| ||||    
T  11639537 caaaacaaaccattacgcgatg 11639558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 8695560 - 8695439
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||   ||||| |||||| ||||    
T  8695560 aacaaacaaaaatataattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 8695461  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||| ||||    
T  8695460 caaaacaaaccattacgcgatg 8695439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 9047447 - 9047326
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||   ||||| |||||| ||||    
T  9047447 aacaaacaaaaatataattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 9047348  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||| ||||    
T  9047347 caaaacaaaccattacgcgatg 9047326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 25342004 - 25341878
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||||||||||| ||| |||||||| |||||||||||||   ||||||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||    
T  25342004 aacaatcaaaaatgaaatatatattaaccaccaaaagcaaccactctagcataaggtgtgccaaaagaactactttacaaacatagagtcatacaaataa 25341905  T
Q  218 ccaaaacaaaccattacgtgatgtcca 244  Q
    |||||||||| ||||| | ||||||||    
T  25341904 ccaaaacaaatcattaagcgatgtcca 25341878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 1764603 - 1764683
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaac 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| ||||||    
T  1764603 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctaacataaggtgtgccaaaagaactactcaacaaac 1764683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 47536740 - 47536845
Alignment:
Q  119 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| |||||||||||| ||||||| |||||||| || ||| | ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  47536740 aacaataaaaaatggaatttatattaaccaccaaaaacagctcctgtagcacaagatgtgccaaaagagctactctacaaacacagagtcatacaaacaa 47536839  T
Q  218 ccaaaa 223  Q
     |||||    
T  47536840 acaaaa 47536845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 26845341 - 26845467
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtc-atacaaaca 216  Q
    |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||  |||| ||||||   |||||| | |||||||    
T  26845341 aacaatcaaaaatggaatatatattaa-caccaaaagcaactcctctagcacaaggtgtgctaaaagaattactttacaaaaacagagtcaaaacaaaca 26845439  T
Q  217 accaaaacaaaccattacgtgatgtcca 244  Q
    ||||| ||||||||||| | ||||||||    
T  26845440 accaatacaaaccattaagcgatgtcca 26845467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 32233749 - 32233670
Alignment:
Q  119 aacaatcaaaaatggaatt-atattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaa 197  Q
    |||||| ||||||| |||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  32233749 aacaataaaaaatgaaatttatattaaccaccaaaagcaactcctctagcacaaggtgtgccaaaagaactactctacaa 32233670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 19221599 - 19221712
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctac-aaacttagagtcatacaaaca 216  Q
    |||||| ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||   ||||| ||| ||||   ||||||||||||||    
T  19221599 aacaataaaaaatggaatatatattaacaaccaaaagcaactcctctagcacaaggtgtgccaaaa---ctactttacaaaacaccgagtcatacaaaca 19221695  T
Q  217 accaaaacaaaccatta 233  Q
    |||| ||||||||||||    
T  19221696 accataacaaaccatta 19221712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 32093582 - 32093477
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    ||||||||||||||| || |||||||| ||||||||||| ||| | ||| |||||| |||||||||||||||||||||||||  ||||||||| || |||    
T  32093582 aacaatcaaaaatgggatatatattaaccaccaaaagcagctcctatagtacaaggcgtgccaaaagagctactctacaaacacagagtcataaaagcaa 32093483  T
Q  218 ccaaaa 223  Q
     |||||    
T  32093482 acaaaa 32093477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 38611305 - 38611389
Alignment:
Q  24 ttaagggtcttgctaactattgcccga-caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||||| |||| |||| | || ||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||    
T  38611305 ttaagggtcttgttaaccattgtcagagcaatggttaaggtaactaaaattagtagctttatattggaaacaacaatttataaac 38611389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 49501003 - 49500936
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaaga 185  Q
    ||||| |||||||||||| |||||||| ||| ||||||||||| ||||||||||| ||||||||||||    
T  49501003 aacaagcaaaaatggaatatatattaaccacaaaaagcaactcctctagcacaagatgtgccaaaaga 49500936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 43122348 - 43122281
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaaga 185  Q
    ||||| |||||||||||| |||||||| ||| ||||||||||| ||||||| ||| ||||||||||||    
T  43122348 aacaagcaaaaatggaatatatattaaccacaaaaagcaactcctctagcataagatgtgccaaaaga 43122281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 46055929 - 46055855
Alignment:
Q  29 ggtcttgctaactattgcccgacaatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttat 103  Q
    |||||||||||| |||||||     |||||||||||||||||||||||||||||| |||  |||||| |||||||    
T  46055929 ggtcttgctaaccattgccctcaggtgattaaggtaaccaaaattagtagttttacattaaaaacaacaatttat 46055855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 50543693 - 50543747
Alignment:
Q  122 aatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtg 175  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||    
T  50543693 aatcaaaaatggaatatatattaatcatcaaaagcaactcctctagcataaggtg 50543747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 24124513 - 24124389
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaa-ctcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaaca 216  Q
    |||||| ||||||||||| |||||||| |||||||||||| ||| |||||||||| ||||| |||| ||  |||| || ||||  | ||||| |||| ||    
T  24124513 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaagtgtgtcaaaggaattactttaaaaacaaacagtcaaacaagca 24124414  T
Q  217 accaaaa-caaaccattacgtgatg 240  Q
     |||||| |||||||||| ||||||    
T  24124413 tccaaaaacaaaccattaagtgatg 24124389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 46664948 - 46665015
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaaga 185  Q
    ||||| ||||||| |||| |||||||| ||| ||||| ||||| ||||||||||| ||||||||||||    
T  46664948 aacaagcaaaaatagaatatatattaaccacaaaaagtaactcctctagcacaagatgtgccaaaaga 46665015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 24980177 - 24980127
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||| ||||||||||||||  ||||| |||||||||| |||||||||||    
T  24980177 ttaaggcaaccaaaattagtaactttatgttggaaacaacaatttataaac 24980127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 38014765 - 38014715
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||||||| |||||||||||| |||| |||||||||||  ||||||||||    
T  38014765 ttaaggtaatcaaaattagtagctttacattggaaacaacgatttataaac 38014715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 20499308 - 20499364
Alignment:
Q  51 caatgattaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    ||||| |||| ||||||||||||| ||||||||||||  ||| || |||||||||||    
T  20499308 caatggttaaagtaaccaaaattaatagttttatattaaaaataataatttataaac 20499364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 147
Target Start/End: Complemental strand, 54559104 - 54559076
Alignment:
Q  119 aacaatcaaaaatggaattatattaatca 147  Q
    |||||||||||||||||||||||||||||    
T  54559104 aacaatcaaaaatggaattatattaatca 54559076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 6831600 - 6831485
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||    
T  6831600 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactttacaaccatagagtcatacaaacaac 6831501  T
Q  219 caaaacaaaccattac 234  Q
    |||| |||||||||||    
T  6831500 caaagcaaaccattac 6831485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 17079860 - 17079739
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||   |||||||||||||||||    
T  17079860 aacaatcaaaaatggaattatattaaccaccaaaagaaactcttctagcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaacaac 17079761  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||| ||||    
T  17079760 caaaacaaaccattacgcgatg 17079739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 9199898 - 9199800
Alignment:
Q  141 ttaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaaccaaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||   ||| || ||||||||||| |||||||| |||||||||||    
T  9199898 ttaatcaccaaaagcaactcttctagcacaaggtgtgtcaaaagaactactctacaaataaagaatcgtacaaacaacc-aaacaaacaattacgtgatg 9199800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 11061520 - 11061430
Alignment:
Q  123 atcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcataca 212  Q
    |||||||||||||| |||| ||| ||||||||||| |||   ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  11061520 atcaaaaatggaatatataataaccaccaaaagcagctcaagtagcacaaggtgtgccaaaagagctactctacaaacacagagtcataca 11061430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 26526001 - 26526127
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtc-atacaaaca 216  Q
    |||||| ||||||||||| |||||||| ||||||||||||||  ||||||||||||||||| ||||||  |||| ||||||  ||||||| | | |||||    
T  26526001 aacaataaaaaatggaatatatattaa-caccaaaagcaacttctctagcacaaggtgtgctaaaagaattactgtacaaaaatagagtcaaaataaaca 26526099  T
Q  217 accaaaacaaaccattacgtgatgtcca 244  Q
    ||||| ||||||||||| | ||||||||    
T  26526100 accaatacaaaccattaagcgatgtcca 26526127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 17874471 - 17874361
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    |||||| ||||||||||| |||||||| |||||||||||||||  ||| |||||| ||||||| ||||  |||| |||||    ||||||||||||||||    
T  17874471 aacaataaaaaatggaatatatattaaacaccaaaagcaactcccctaacacaagttgtgccagaagaattactttacaagaacagagtcatacaaacaa 17874372  T
Q  218 ccaaaacaaac 228  Q
    |||||||||||    
T  17874371 ccaaaacaaac 17874361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 22616849 - 22616899
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  22616849 ttaaggtaaccaaaatgagtagttttacattggaaacaacaatttataaac 22616899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 6615007 - 6614957
Alignment:
Q  57 ttaaggtaaccaaaattagtagttttatattggaaacaaaaatttataaac 107  Q
    |||||||||| |||||||||||||||| | | ||||||| |||||||||||    
T  6615007 ttaaggtaactaaaattagtagttttacactagaaacaataatttataaac 6614957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 1344 - 1469
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    |||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||| |||||||| |||| ||||||||||||||||||    
T  1344 aacaataaaaaatggaattatattaatcactaaaaacaactcttttagcacaaggtgtgccgaaagaactactctataaacatagagtcatacaaacaac 1443  T
Q  219 caaaacaaaccattacgtgatgtcca 244  Q
    ||||| |||||||||| |||||||||    
T  1444 caaaataaaccattacatgatgtcca 1469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 181600 - 181721
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||   | ||| |||||| ||||    
T  181600 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacaaagttatacaaccaac 181699  T
Q  219 caaaacaaaccattacgtgatg 240  Q
    ||||||||||||||||| ||||    
T  181700 caaaacaaaccattacgcgatg 181721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 11550 - 11655
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaa 217  Q
    ||||||||||||||| || |||||||| ||||||||||| ||| | |||||||||| |||||||||||||||||||||||||  |||| |||||||||||    
T  11550 aacaatcaaaaatgggatatatattaaccaccaaaagcagctcctatagcacaaggcgtgccaaaagagctactctacaaacacagagccatacaaacaa 11649  T
Q  218 ccaaaa 223  Q
     |||||    
T  11650 acaaaa 11655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 8457 - 8380
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctaca 196  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||  |||||| |||| ||||| ||||    
T  8457 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaagacgtgccacaagaactactataca 8380  T

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Target: scaffold0765 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 1455 - 1348
Alignment:
Q  119 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatacaaacaac 218  Q
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T  1455 aacaaacaaaaatggaaatatattaaataccaaaagcaactctcctagcacaaggtgtgccagaagaattact-tacaagaacagagtcatacaaataac 1357  T
Q  219 caaaacaaa 227  Q
    |||||||||    
T  1356 caaaacaaa 1348  T

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Target: scaffold0179 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 6997 - 7113
Alignment:
Q  119 aacaatcaaaaatggaat-tatattaatcaccaaaagcaactcttcta-gcacaaggtgtgccaaaagagctactctacaaacttagagtc-atacaaac 215  Q
    |||||| ||||||||||| |||||||| ||||| ||||||||| |||| |||||| |||||| ||||||  |||||||||||  ||||||| | ||||||    
T  6997 aacaataaaaaatggaatatatattaa-caccagaagcaactcctctaagcacaaagtgtgctaaaagaattactctacaaaaatagagtcaaaacaaac 7095  T
Q  216 aaccaaaacaaaccatta 233  Q
    |||||| |||||||||||    
T  7096 aaccaatacaaaccatta 7113  T

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