View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_low_25 (Length: 255)
Name: NF2853_1D_low_25
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_25 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 2537 - 2763
Alignment:
| Q |
19 |
catcatgactcttcaatgttcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2537 |
catcatgactcttcaacgttcctttcaacttaagagcttctaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
2636 |
T |
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| Q |
119 |
aattgttaaaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
218 |
Q |
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| T |
2637 |
aattgttaaaaaatccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
2736 |
T |
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| Q |
219 |
acttcaaggtctctacgagcatcaaca |
245 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2737 |
acttcaaggtctctacgagcatcaaca |
2763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 17006560 - 17006334
Alignment:
| Q |
19 |
catcatgactcttcaatgttcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatcaggcactgtgatattctttaa |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17006560 |
catcatgactcttcaacattcctttcaacttaagagcttccaagtcaatgcatctagaaatgttgcttgaataaccatccggcactgtgatattctttaa |
17006461 |
T |
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| Q |
119 |
aattgttaaaaattccctcttacttttaccagtcaaagtaaaaattgccggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
218 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17006460 |
aattgttaaaaattccctcttacatttaccagtcaaagtaaaaattgtcggagaaatttttccattttcattgcaccaaaggtcagatcttatgcccata |
17006361 |
T |
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| Q |
219 |
acttcaaggtctctacgagcatcaaca |
245 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
17006360 |
acttcaaggtctcttcgagcatcaaca |
17006334 |
T |
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