View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_1D_low_27 (Length: 230)

Name: NF2853_1D_low_27
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_1D_low_27
NF2853_1D_low_27
[»] chr4 (13 HSPs)
chr4 (4-124)||(3920480-3920600)
chr4 (1-124)||(3809281-3809404)
chr4 (4-124)||(4024500-4024620)
chr4 (4-124)||(3986263-3986383)
chr4 (8-124)||(3956228-3956344)
chr4 (4-105)||(4001593-4001694)
chr4 (4-95)||(3933704-3933795)
chr4 (4-124)||(3816867-3816984)
chr4 (4-95)||(4009293-4009384)
chr4 (4-118)||(3800862-3800974)
chr4 (4-94)||(4217938-4218028)
chr4 (4-92)||(4018017-4018105)
chr4 (20-92)||(3964019-3964091)
[»] chr3 (1 HSPs)
chr3 (118-224)||(54804085-54804191)
[»] chr5 (1 HSPs)
chr5 (4-124)||(13397215-13397335)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 3920480 - 3920600
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaacacc 103  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920480 aaagctcttataactatttctgaagataatgttatatctatgcatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaacacc 3920579  T
Q  104 ctgaaaaacgcagtcgattat 124  Q
    |||||||||||||||||||||    
T  3920580 ctgaaaaacgcagtcgattat 3920600  T

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Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 3809404 - 3809281
Alignment:
Q  1 gacaaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaac 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3809404 gacaaagctcttataactatttctgaatataatgttatatctatgcatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaac 3809305  T
Q  101 accctgaaaaacgcagtcgattat 124  Q
    ||||||||||||||||||||||||    
T  3809304 accctgaaaaacgcagtcgattat 3809281  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 4024620 - 4024500
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaacacc 103  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||    
T  4024620 aaagctcttataactatttctgaagataatattatatctatgcatgacattctacaagaaatgggtcgggaggttgttcgccaagaatctagtgcagacc 4024521  T
Q  104 ctgaaaaacgcagtcgattat 124  Q
    ||  |||||||||||||||||    
T  4024520 ctagaaaacgcagtcgattat 4024500  T

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Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 3986383 - 3986263
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaacacc 103  Q
    |||||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||    
T  3986383 aaagctctcataactatttctgaagataatgttatatctatgcatgacattcttcaagaaatgggtcgggaggttgttcgccaagaatctagtgaatacc 3986284  T
Q  104 ctgaaaaacgcagtcgattat 124  Q
    |  | ||||||||||||||||    
T  3986283 caaacaaacgcagtcgattat 3986263  T

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Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 3956228 - 3956344
Alignment:
Q  8 ctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaacaccctga 107  Q
    |||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||      
T  3956228 ctcttataacaatttctgaagataatgttatatccatgcatgacattctacaagaaatgggtcgggaggttgttcgccaagaatccagtgaagaccctag 3956327  T
Q  108 aaaacgcagtcgattat 124  Q
    |||| ||||||||||||    
T  3956328 aaaatgcagtcgattat 3956344  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 4001694 - 4001593
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaacacc 103  Q
    |||||||||||||||||||| ||| |||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||    
T  4001694 aaagctcttataactatttcgaaatataatgttgtatctatgcatgacattttacaagaaatgggtcgggaggttgttcgccaagaatctagtgaagacc 4001595  T
Q  104 ct 105  Q
    ||    
T  4001594 ct 4001593  T

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Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 3933704 - 3933795
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctag 95  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||| ||||||| ||||| |||||||||||    
T  3933704 aaagctcttataactatttctgaagataatgttatatctatgcatgacattcttcaagaaatgggttgggaggttgttcggcaagaatctag 3933795  T

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Target: chr4; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 3816984 - 3816867
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaacacc 103  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||| ||||| | ||||| ||||||||||| |   |||    
T  3816984 aaagctcttataactatttctgaagataatgttatatctatgcatgacattcttcaagaaatgggttgggagattgttcggcaagaatctagtg---acc 3816888  T
Q  104 ctgaaaaacgcagtcgattat 124  Q
     || |||||||||||||||||    
T  3816887 ttggaaaacgcagtcgattat 3816867  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 4009384 - 4009293
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctag 95  Q
    |||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  4009384 aaagctcttataacaatttctgaagataatgtaatatctatgcatgacattctacaagaaatgggtcgggaggttgttcgttaagaatctag 4009293  T

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Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 3800974 - 3800862
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaacacc 103  Q
    |||||||||||||||||||||   |||||||||||||||||| |||||||||||  |||||||||||||||||| ||||||||||||| ||| ||| |||    
T  3800974 aaagctcttataactatttctc--gataatgttatatctatgcatgacattctatgagaaatgggtcgggaggttgttcgccaagaatatagtgaagacc 3800877  T
Q  104 ctgaaaaacgcagtc 118  Q
    ||  |||| ||||||    
T  3800876 ctagaaaatgcagtc 3800862  T

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Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 4218028 - 4217938
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatcta 94  Q
    ||||||||||| ||||||||| |||||||||| ||||||||| ||||| ||| |||| | |||||||||||||| ||||||| ||||||||    
T  4218028 aaagctcttattactatttctgaagataatgtaatatctatgcatgactttcaacaaaagatgggtcgggaggttgttcgcctagaatcta 4217938  T

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Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 4018105 - 4018017
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatc 92  Q
    |||| ||||||| || |||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||  | ||||||||||||||    
T  4018105 aaaggtcttatatctttttctaaagataatgttatatccatgcatgacattatacaagaaatgggtagggaaattgttcgccaagaatc 4018017  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 3964019 - 3964091
Alignment:
Q  20 tttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatc 92  Q
    |||||||| ||||||||||||||||| |||  ||| ||||||| |||||| ||||| | ||||||||||||||    
T  3964019 tttctaaacataatgttatatctatgcatggaattatacaagacatgggtagggagattgttcgccaagaatc 3964091  T

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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 54804191 - 54804085
Alignment:
Q  118 cgattattaatgggaatagataggtctgataagaaataaagcatatatgattttattccttacgaaagattaaaattgctgataaaataacaagtgagta 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  54804191 cgattattaatgggaatagataggtctgataagaaataaagcttatatgattttattccttactaaagattaaaattgctgataaaataataagtgagta 54804092  T
Q  218 agctcaa 224  Q
    |||||||    
T  54804091 agctcaa 54804085  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 13397335 - 13397215
Alignment:
Q  4 aaagctcttataactatttctaaagataatgttatatctatgtatgacattctacaagaaatgggtcgggaggtagttcgccaagaatctagagaacacc 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| |||    
T  13397335 aaagctcttataactatttctaaagataatgttatatctatgcatgacattctacaggaaatgggtcgcgaggttgttcgccaagaatctagtgaagacc 13397236  T
Q  104 ctgaaaaacgcagtcgattat 124  Q
    ||  |||| ||||||||||||    
T  13397235 ctagaaaatgcagtcgattat 13397215  T

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