View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_low_3 (Length: 495)
Name: NF2853_1D_low_3
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 47368112 - 47368574
Alignment:
| Q |
9 |
tggtgttcgagttgtgtgaagctcgtatctgacatcagggataaccgagagaattcccggttgctttgtgagtaagtctgcttcttgagtagttagcctt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47368112 |
tggtgttcgagttgtgtgaagctcgtatctgacatcagggataaccgagagaattcccggttgctttgtgagtaagtctgcttcttgagtagttagcctt |
47368211 |
T |
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| Q |
109 |
gtggagaagccatgagctacatgtttgtaggtatacatcgtctctgcagtgtctgatactgattttagtgatgaatcataccattggagatgatcgtcga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47368212 |
gtggagaagccatgagctacatgtttgtaggtatacatcgtctctgcagtgtctgatactgattttagtgatgaatcataccattggagatgatcgtcga |
47368311 |
T |
|
| Q |
209 |
aacttgctggcatgttgaacttgtccatgtgaattatgtatgtccttttaagatgctgtgttttcttttctgctacggtgaatctgctagacaaaactag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47368312 |
aacttgctggcatgttgaacttgtccatgtgaattatgtatgtccttttaagatgttgtgttttcttttctgctatggtgaatctgctagacaaaactag |
47368411 |
T |
|
| Q |
309 |
cagcaaagccatctgaagacacttgaaaatcagcatattcatcttttagctccagtatgagagttgtagttttggcttctttttgaatttgctttagaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47368412 |
cagcaaagccatctgaagacacttgaaaatcagcatgttcatcttttagctccagtatgagagttgtagttttggcttctttttgaatttgctttagaat |
47368511 |
T |
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| Q |
409 |
tgcagggatagctggtatttattattggtttggaactattgagtctgtggagattggtagatt |
471 |
Q |
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| T |
47368512 |
tgcagggatagctggtatttattattggtttggaactattgagtctgtggagattggtagatt |
47368574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 5374462 - 5374220
Alignment:
| Q |
9 |
tggtgttcgagttgtgtgaagctcgtatctgacatcagggataaccgagagaattcccggttgctttgtgagtaagtctgcttcttgagtagttagcctt |
108 |
Q |
| |
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|||||||| ||||||||||| | |||||||| ||||| ||||| ||||||||| || || |||| ||| || |||||||| ||||||| ||| |
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| T |
5374462 |
tggtgttcttgttgtgtgaagttggtatctgagttcaggtataacatcgagaattccgggctgttttgaaagtgtttcggcttcttggttagttagtctt |
5374363 |
T |
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| Q |
109 |
gtggagaagccatgagctacatgtttgtaggtatacatcgtctctgcagtgtctgatactgattttagtgatgaatcataccattggagatgatcgtcga |
208 |
Q |
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|||||| | |||||||||| |||||||| || || | ||||||| || ||||||||||||||||| |||| ||| |||| | || ||||| || |
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| T |
5374362 |
gtggagtatccatgagctatgtgtttgtatgtgtatagaatctctgctgtttctgatactgattttagcgatgtatcgaaccagttaaggtgatcagtga |
5374263 |
T |
|
| Q |
209 |
aacttgctggcatgttgaacttgtccatgtgaattatgtatgt |
251 |
Q |
| |
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| || |||||||| || | ||||||||||||||||||||||| |
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| T |
5374262 |
atgtttctggcatggtggatttgtccatgtgaattatgtatgt |
5374220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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