View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_1D_low_33 (Length: 222)
Name: NF2853_1D_low_33
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_33 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 22803950 - 22804171
Alignment:
| Q |
1 |
tcatttgggtcaacagtttgt-ttcaaggcttgcagcaacgccnnnnnnnggacctctggtaccttctccattgagtccttgtcatggggttctttcctt |
99 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22803950 |
tcatttgggtcaacagtttgtcttcaaggcttgcagcaacgcctttttt-ggacctctggtaccttctccattgagtccttgtcatggggttctttcctt |
22804048 |
T |
|
| Q |
100 |
tgtagttgttgttgtaagcatacttctttgactcaaaggcaataccatttttgttgtcatcaatagtactattgcttcttttcaccacattgttcttccc |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22804049 |
tgtagttgttgttgtaagcatacttctttgactcaaaggcagtaccatttttgttgtcaacaatagtactattgcttcttttcaccacattgttcttccc |
22804148 |
T |
|
| Q |
200 |
atgttgcacattcttatgggtcg |
222 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
22804149 |
atgttgcacattcttatgggtcg |
22804171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 24899831 - 24900000
Alignment:
| Q |
51 |
gacctctggtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggcaataccatttt |
150 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||||| || ||||||||| | ||| ||||| |
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| T |
24899831 |
gacctctggtaccttctccattgagtccttgtcatgggattctttcccttgtagttgttgctataagcatactttttcaactcaaaggtagtacaatttt |
24899930 |
T |
|
| Q |
151 |
tgttgtcatcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggt |
220 |
Q |
| |
|
|||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899931 |
tgttgttatcaacaacactgatgcttcttttcaccacattgttcttcccatgttgcacattcttatgggt |
24900000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 22261340 - 22261505
Alignment:
| Q |
61 |
accttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcata----cttctttgactcaaaggcaataccatttttgttgt |
156 |
Q |
| |
|
|||| ||||| ||||| ||| ||||||| |||||||| ||||||||| | | ||||||| |||||||||||| |||||| ||||||||||||||| |
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| T |
22261340 |
acctactccactgagttcttatcatgggattctttcccttgtagttgcttctacaagcatatatacttctttgactcgaaggcagtaccatttttgttgt |
22261439 |
T |
|
| Q |
157 |
catcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtcg |
222 |
Q |
| |
|
|| | | | | || ||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
22261440 |
tctccacaacattggtgtttcttttcaccacattgtttttcccatgttgcacattcttatgggtcg |
22261505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 17019908 - 17020075
Alignment:
| Q |
52 |
acctctggtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggcaataccattttt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| || ||||| ||| ||||||||||| ||||||||||| |||||||| ||||||||| |
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| T |
17019908 |
acctctggtaccttctccattgagtccttgtcatgggggtcttccccttgtaattgctgttgtaagcaaacttctttgacgcaaaggcatcaccattttt |
17020007 |
T |
|
| Q |
152 |
gttgtcatcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtcg |
222 |
Q |
| |
|
||| ||| |||| || | || ||| ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
17020008 |
gttatcaacaat--ta-tggtgtttcatttcaccacattgtttttcccatgttgcacattcttatgggtcg |
17020075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 18217923 - 18217751
Alignment:
| Q |
50 |
ggacctctggtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggcaataccattt |
149 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| || || ||||| |||||||| | | |||||||||||||| |||||||||||| |||||||| |
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|
| T |
18217923 |
ggacctctggtacctcctccattgagttcttgtcataggattatttcccttgtagtttcttctataagcatacttcttcgactcaaaggcagtaccattt |
18217824 |
T |
|
| Q |
150 |
ttgttgtcatcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtcg |
222 |
Q |
| |
|
||||||| ||| | | ||| || ||| |||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
18217823 |
ttgttgttatccacaacacttgtgtttcctttcaccatattgttcttcccatgttgcacattcttgtgggtcg |
18217751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 21306675 - 21306594
Alignment:
| Q |
59 |
gtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggca |
140 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| ||||||||||| | |||||| ||||| | |||||||||||| |
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| T |
21306675 |
gtaccttctccattgagttcttgtcatgggattctttcccttgtagttgtttctataagcaaacttcctcgactcaaaggca |
21306594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 21312340 - 21312260
Alignment:
| Q |
142 |
taccatttttgttgtcatcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtcg |
222 |
Q |
| |
|
||||||||||||||| ||| | | ||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
21312340 |
taccatttttgttgttatccacaacacttgtgtttcttttcaccacattgttcttcccatgctgcacattcttatgggtcg |
21312260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 22616398 - 22616356
Alignment:
| Q |
180 |
ttcaccacattgttcttcccatgttgcacattcttatgggtcg |
222 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
22616398 |
ttcaccacattgttcttcccatactgaacattcttatgggtcg |
22616356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 24987817 - 24987651
Alignment:
| Q |
54 |
ctctggtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggcaataccatttttgt |
153 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| || ||||| |||||||||||| | |||||| ||||||| |||||||||| | |||||||||||| |
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|
| T |
24987817 |
ctctggtaccttctccattgagttcttatcatgggattatttcccttgtagttgttgctataagcaaacttcttcgactcaaaggtagtaccatttttgt |
24987718 |
T |
|
| Q |
154 |
tgtcatcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggt |
220 |
Q |
| |
|
| | ||||| | ||| || ||||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
24987717 |
tattatcaacaacactggtggttcttttcaccgcattgttcttaccatgttgcacattcttatgggt |
24987651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 25566784 - 25566612
Alignment:
| Q |
50 |
ggacctctggtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggcaataccattt |
149 |
Q |
| |
|
||||||| ||||||| ||||||||| | ||||||||| | |||||||||||| | ||||| | ||| || ||||| | || ||||||| || ||||||| |
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|
| T |
25566784 |
ggacctccggtacctcctccattgatttcttgtcatgtgattctttcctttgcaactgttgctataaacaaacttcctcgattcaaagggaacaccattt |
25566685 |
T |
|
| Q |
150 |
ttgttgtcatcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtcg |
222 |
Q |
| |
|
||||| | ||| | | ||| || ||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25566684 |
ttgttattatccacaacactggtgtttcttgtcaccatattgttcttcccatgttgcacattcttatgggtcg |
25566612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 35162 - 35316
Alignment:
| Q |
60 |
taccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggcaataccatttttgttgtcat |
159 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
35162 |
taccttctccattgagttcttgtcatggggttcttccccttgtaattgttgttgtaagcatacttctttgactcaaaggcaataccattt--------at |
35253 |
T |
|
| Q |
160 |
caatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtcg |
222 |
Q |
| |
|
|| |||||| ||||| |||||||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
35254 |
aaacagtactggtgctttctttcaccacattatttttcccatgttgcacattcttatgagtcg |
35316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 16922422 - 16922594
Alignment:
| Q |
50 |
ggacctctggtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggcaataccattt |
149 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||| || ||| | ||||||||||||| | || | ||||| | |||||||||||| |||||||| |
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|
| T |
16922422 |
ggacctctggtacctcctccactgagttcttgtcatgggattatttaccttgtagttgttgtaatgagaaaacttcctcgactcaaaggcagtaccattt |
16922521 |
T |
|
| Q |
150 |
ttgttgtcatcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtcg |
222 |
Q |
| |
|
||||||| ||| | | ||| || |||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16922522 |
ttgttgttatccacaacactggtgtttcttttcaccatattgttcttcccatgttgcacattcttgtgggtcg |
16922594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 2284489 - 2284658
Alignment:
| Q |
51 |
gacctctggtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggcaataccatttt |
150 |
Q |
| |
|
||||||||| ||||||||| || || |||||||| || | |||||| ||||||||||| | |||||| ||||||| ||||||||| | ||| ||||| |
|
|
| T |
2284489 |
gacctctggaaccttctccgttatgttcttgtcattggatactttcccatgtagttgttgctataagcaaacttcttcaactcaaaggtagtacgatttt |
2284588 |
T |
|
| Q |
151 |
tgttgtcatcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggt |
220 |
Q |
| |
|
| |||| ||| | | ||| || |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2284589 |
tattgttatccacaacactggtgtttcttttcaccacattgttcttcccatgttgcacatacttatgggt |
2284658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 17136272 - 17136319
Alignment:
| Q |
175 |
ttcttttcaccacattgttcttcccatgttgcacattcttatgggtcg |
222 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
17136272 |
ttcttttcaccacattgttttccccatgttgcacattcttgtgggtcg |
17136319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 16053356 - 16053429
Alignment:
| Q |
60 |
taccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactc |
133 |
Q |
| |
|
||||||||||| ||||||||| |||| || || || ||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
16053356 |
taccttctccactgagtccttatcataggatttttccctttttaattgttactgtaagcatacttctttgactc |
16053429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 80037 - 79873
Alignment:
| Q |
58 |
ggtaccttctccattgagtccttgtcatggggttctttcctttgtagttgttgttgtaagcatacttctttgactcaaaggcaatac-catttttgttgt |
156 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||||| ||||| |||||| | |||||| |||||||||||||||| | | ||| |||||||||| | |
|
|
| T |
80037 |
ggtaccttctccattgagttcttgtcatgtgattctttcccttgtaattgttgctataagcaaacttctttgactcaaatgaagtacacatttttgtttt |
79938 |
T |
|
| Q |
157 |
catcaatagtactattgcttcttttcaccacattgttcttcccatgttgcacattcttatgggtc |
221 |
Q |
| |
|
||| | | | | || ||| ||| ||||||||||||||||||| ||| ||||| || |||||| |
|
|
| T |
79937 |
tatccacaacattggtgtttccttttaccacattgttcttcccattttgtacattattttgggtc |
79873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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