View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_low_35 (Length: 219)
Name: NF2853_1D_low_35
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_35 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 41846304 - 41846090
Alignment:
| Q |
5 |
tggacatcagaggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttac |
104 |
Q |
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| T |
41846304 |
tggacatcagaggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttac |
41846205 |
T |
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| Q |
105 |
aacctgagaaaaggccaacaatgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcaa |
204 |
Q |
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| T |
41846204 |
aacctgagaaaaggccaacaatgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcga |
41846105 |
T |
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| Q |
205 |
ttcactttcaccttc |
219 |
Q |
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| T |
41846104 |
ttcactttcaccttc |
41846090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 26890703 - 26890908
Alignment:
| Q |
14 |
gaggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgttggactagcttgtgttgcgttacaacctgaga |
113 |
Q |
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| T |
26890703 |
gaggtttttgatcaagaacttctgcgatacaagaacattgaggaagagcttgtgtcaatgctgcatgttgggttggcttgtgtggtgcagcagccagaga |
26890802 |
T |
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| Q |
114 |
aaaggccaacaatgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagagaggattatgatgaatctcgcaattcactttc |
213 |
Q |
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| T |
26890803 |
agaggccaactatggtagatgttgttaaaatgattgaggatatcagagtggagcaatctcctctgtgtgaggactatgacgaatcacgcaattcgctttc |
26890902 |
T |
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| Q |
214 |
accttc |
219 |
Q |
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| T |
26890903 |
accttc |
26890908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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