View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_low_36 (Length: 212)
Name: NF2853_1D_low_36
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_36 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 16698000 - 16697803
Alignment:
| Q |
1 |
tagcactagcaaactagatatatgcagaacacattgagtgccttcgcttgcaacatgtgtcattgaaatggaagaaggaattgtccttggtttgctggaa |
100 |
Q |
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| T |
16698000 |
tagcactagcaaactagatatatgcagaacacattgagtgccttggcttgcaacatgtgtcattgaaatagaagaaggaattgtccttggtttgctggaa |
16697901 |
T |
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| Q |
101 |
atttttcgttcgatactgcttctgcacttaagtattaattctagggaattcacagatactttgatgtcattatgctcgttcagttttatatggatgtc |
198 |
Q |
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| T |
16697900 |
atttttcattcgatactgcttctgcacttaagtattaattctagggaattcgcagatacattgatgtcattatgctcgttcagttttatatggatgtc |
16697803 |
T |
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Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 38227527 - 38227357
Alignment:
| Q |
14 |
ctagatatatgcagaacacattgagtgccttcgcttgcaacatgtgtcattgaaatggaagaaggaattgtccttggtttgctggaaatttttcgttcga |
113 |
Q |
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| T |
38227527 |
ctagatatatgcagaacacatttactgccctggcttgcaacaggcatcat-gaaatggaagaagaattattcctgggtttgctggaaatttt-cattcga |
38227430 |
T |
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| Q |
114 |
tactgcttctgcacttaagtattaattctagggaattcacagatactttgatgtcattatgctcgttcagtttt |
187 |
Q |
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| T |
38227429 |
tactgcttctacattgtagtatta-ttctagggaattcgcagagactttgatgtcattctgctggttcagtttt |
38227357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 103356 - 103176
Alignment:
| Q |
18 |
atatatgcagaacacattgagtgccttcgcttgcaacatgtgtcattgaaatggaagaaggaattgtccttggtttgctggaaatttttcgttcgatact |
117 |
Q |
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| T |
103356 |
atatacgcataacacatttaatgccttgtatttcaacaggcgtcattgaaatggaagaataaattatacctggcttgtttgaaaattttcatttgatact |
103257 |
T |
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| Q |
118 |
gcttctgcacttaagtattaattctagggaattcacagatactttgatgtcattatgctcgttcagttttatatggatgtc |
198 |
Q |
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| T |
103256 |
gattctgcactatagtattaattctagggaatttgcagagactttgatgtcattctgctggtttagttttatgtggatgtc |
103176 |
T |
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