View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_low_6 (Length: 474)
Name: NF2853_1D_low_6
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 47368142 - 47368574
Alignment:
| Q |
18 |
gacatcagggataaccgagagaattcccggttgctttgtgagtaagtctgcttcttgagtagttagccttgtggagaagccatgagctacatgtttgtag |
117 |
Q |
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| T |
47368142 |
gacatcagggataaccgagagaattcccggttgctttgtgagtaagtctgcttcttgagtagttagccttgtggagaagccatgagctacatgtttgtag |
47368241 |
T |
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| Q |
118 |
gtatacatcgtctctgcagtgtctgatactgattttagtgatgaatcataccattggagatgatcgtcgaaacttgctggcatgttgaacttgtccatgt |
217 |
Q |
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| T |
47368242 |
gtatacatcgtctctgcagtgtctgatactgattttagtgatgaatcataccattggagatgatcgtcgaaacttgctggcatgttgaacttgtccatgt |
47368341 |
T |
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| Q |
218 |
gaattatgtatgtccttttaagatgctgtgttttcttttctgctacggtgaatctgctagacaaaactagcagcaaagccatctgaagacacttgaaaat |
317 |
Q |
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| T |
47368342 |
gaattatgtatgtccttttaagatgttgtgttttcttttctgctatggtgaatctgctagacaaaactagcagcaaagccatctgaagacacttgaaaat |
47368441 |
T |
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| Q |
318 |
cagcatattcatcttttagctccagtatgagagttgtagttttggcttctttttgaatttgctttagaattgcagggatagctggtatttattattggtt |
417 |
Q |
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| T |
47368442 |
cagcatgttcatcttttagctccagtatgagagttgtagttttggcttctttttgaatttgctttagaattgcagggatagctggtatttattattggtt |
47368541 |
T |
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| Q |
418 |
tggaactattgagtctgtggagattggtagatt |
450 |
Q |
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| T |
47368542 |
tggaactattgagtctgtggagattggtagatt |
47368574 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 5374383 - 5374220
Alignment:
| Q |
67 |
gcttcttgagtagttagccttgtggagaagccatgagctacatgtttgtaggtatacatcgtctctgcagtgtctgatactgattttagtgatgaatcat |
166 |
Q |
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|||||||| ||||||| ||||||||| | |||||||||| |||||||| || || | ||||||| || ||||||||||||||||| |||| ||| |
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| T |
5374383 |
gcttcttggttagttagtcttgtggagtatccatgagctatgtgtttgtatgtgtatagaatctctgctgtttctgatactgattttagcgatgtatcga |
5374284 |
T |
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| Q |
167 |
accattggagatgatcgtcgaaacttgctggcatgttgaacttgtccatgtgaattatgtatgt |
230 |
Q |
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| T |
5374283 |
accagttaaggtgatcagtgaatgtttctggcatggtggatttgtccatgtgaattatgtatgt |
5374220 |
T |
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