View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_low_8 (Length: 388)
Name: NF2853_1D_low_8
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 38129667 - 38129868
Alignment:
| Q |
22 |
aatgacatcccatggcagtgtcaagctatgtgtgtaagcatttgctatttcacgatcaatccttgattgcatctcccaaagtggatgttggttnnnnnnn |
121 |
Q |
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| T |
38129667 |
aatgacatcccatggcagtgtcaagctatgtgtgtaagcatttgctatttcacgatcaatccttgattgcatctcccaaagtggatgttggttaaaaaaa |
38129766 |
T |
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| Q |
122 |
ggcgccagctcttgatcattgattatagcttcaacactatgatatcttctgtacccataaaatagagcatataattccacgtaggtccagttttccctga |
221 |
Q |
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| T |
38129767 |
ggcgccagctcttgatcattgattatagcttcaacactatgatatcttctgtacccataaaatagagcatataattccacgtaggtccagttttccctga |
38129866 |
T |
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| Q |
222 |
ac |
223 |
Q |
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|| |
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| T |
38129867 |
ac |
38129868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 249 - 368
Target Start/End: Original strand, 38129893 - 38130012
Alignment:
| Q |
249 |
ggttatgatttgttttagatgataattttcaaacaagcgtacagtaaaaagatcactaatacgtacatgggtatttcatgcctgtaatttaattgaagcc |
348 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38129893 |
ggttatgatttgttttagataataattttcaaacaagcatacagtaaaaagatcactaatacgtacatgggtatttcatgcctgtaatttaattgaagcc |
38129992 |
T |
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| Q |
349 |
ctagaggaaattgaacttga |
368 |
Q |
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| T |
38129993 |
ctagaggaaattgaacttga |
38130012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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