View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_1D_low_9 (Length: 380)
Name: NF2853_1D_low_9
Description: NF2853_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_1D_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 220 - 380
Target Start/End: Original strand, 53788240 - 53788400
Alignment:
| Q |
220 |
cataaatccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttgg |
319 |
Q |
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| T |
53788240 |
cataaatccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttgg |
53788339 |
T |
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| Q |
320 |
ctaagaaaacgtggtgagtaatggtacccactcactctatctttgctatgatgtgaagtgt |
380 |
Q |
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| T |
53788340 |
ctgagaaaccgtggtgagtaatggtacccactcactctatctttgctatgatgtgaagtgt |
53788400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 53788091 - 53788241
Alignment:
| Q |
22 |
attccatctatctaggacttcgttaaattcatttgcaaatgcttgttgggaaaatcaactg-ttccattatttgagtatttgaataattttctttccaat |
120 |
Q |
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| T |
53788091 |
attccatctatccaggacttcgttaaattcatttgcaaatgcttgttgggaaaatcaaccggttccattatttgagtattgcaataatttttttcccaat |
53788190 |
T |
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| Q |
121 |
atttaatcacttccagcatcttgattcaatttgacattctcttccattaca |
171 |
Q |
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| T |
53788191 |
atttaatcacttccagcatcttgattcaatttaacattctcttctattaca |
53788241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 5273172 - 5273237
Alignment:
| Q |
126 |
atcacttccagcatcttgattcaatttgacattctcttccattacaatctcgttcaggggtggaac |
191 |
Q |
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| T |
5273172 |
atcacttgcagaatcttcattcattctcacattctcttccattacaatctcattaagggatggaac |
5273237 |
T |
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