View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_2D_high_10 (Length: 350)
Name: NF2853_2D_high_10
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_high_10 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 12751 - 13071
Alignment:
| Q |
14 |
tatatacttcccaagttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctac |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12751 |
tatatgcttcccaagttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctac |
12850 |
T |
|
| Q |
114 |
ttgactctttacacaacctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtg |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12851 |
ttgactctttacacaacctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtg |
12950 |
T |
|
| Q |
214 |
taatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatttccatatctagaagaattgaacattgattactgcaaatatatggtgaga |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12951 |
taatacaagactggctttcgaaaagggtagcgtcctaatttcagatgcatttccaaatctagaagaattgaacattgattactgcaaagatatggtgaga |
13050 |
T |
|
| Q |
314 |
tttcctcctggtatatgtgat |
334 |
Q |
| |
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|||||| |||||||||||||| |
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|
| T |
13051 |
tttcctactggtatatgtgat |
13071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 38 - 310
Target Start/End: Original strand, 33975812 - 33976084
Alignment:
| Q |
38 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
137 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| || | |||||||| |||||| || |
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| T |
33975812 |
aaaatgagtaaactaagagttctgataatcacaaactacggtttccatccttctaaactgaacaacattgagcttctcggttctttacagaacctggaaa |
33975911 |
T |
|
| Q |
138 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaa |
237 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||||||||||||||||| | ||| ||||||||| || ||||||||||| |||| ||||||||| ||||| |
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|
| T |
33975912 |
gaatcagactagagcgaatttcggtcccttccttcggcacattgaagaatttgaaaaaactatctctgtacatgtgtaacacaatactggcttttgaaaa |
33976011 |
T |
|
| Q |
238 |
gggtagcgtcctaatttcagatgcatttccatatctagaagaattgaacattgattactgcaaatatatggtg |
310 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |
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| T |
33976012 |
gggtagcatcctaatttcagatgcatttccaaatctagaagaattgaacattgattactgcaaagatttggtg |
33976084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 38 - 334
Target Start/End: Original strand, 33960517 - 33960813
Alignment:
| Q |
38 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
137 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| || | |||||||| |||||| || |
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|
| T |
33960517 |
aaaatgagtaaactaagagttctgataatcacaaactacggtttccatccttctaaactgaacaacattgagcttctcggttctttacagaacctggaaa |
33960616 |
T |
|
| Q |
138 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaa |
237 |
Q |
| |
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|||| ||||| ||||||||||| || |||||||||||||||||||||| | ||| ||||||||| || ||||||||||| |||| ||||||||| ||||| |
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|
| T |
33960617 |
gaatcagactagagcgaatttcggtcccttccttcggcacattgaagaatttgaaaaaactatctctctacatgtgtaacacaatactggcttttgaaaa |
33960716 |
T |
|
| Q |
238 |
gggtagcgtcctaatttcagatgcatttccatatctagaagaattgaacattgattactgcaaatatatggtgagatttcctcctggtatatgtgat |
334 |
Q |
| |
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||||||| |||||||||||||||||||| || | |||||||||||||||||||||||||||||| || ||||| |||||| ||||||| |||||| |
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| T |
33960717 |
gggtagcatcctaatttcagatgcatttgcaaacctagaagaattgaacattgattactgcaaagatttggtggtatttccaactggtatctgtgat |
33960813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 38 - 310
Target Start/End: Original strand, 33953211 - 33953483
Alignment:
| Q |
38 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
137 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||| || | |||||||| |||||| || |
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|
| T |
33953211 |
aaaatgagtaaactaagagttctgataatcacaaactacgatttccatccttctaaactgaacaacattgagcttctcggttctttacagaacctggaaa |
33953310 |
T |
|
| Q |
138 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaa |
237 |
Q |
| |
|
|||| ||| | ||||| |||| ||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||| |||| ||||||||| ||||| |
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|
| T |
33953311 |
gaatcagattagagcggatttacgttccttccttcggcacattgaagaatctgaaaaaactatctctctacatgtgtaacacaatactggcttttgaaaa |
33953410 |
T |
|
| Q |
238 |
gggtagcgtcctaatttcagatgcatttccatatctagaagaattgaacattgattactgcaaatatatggtg |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
33953411 |
gggtagcatcctaatttcagatgcatttccaaatctagaagaattgaacattgattactgcaaagatttggtg |
33953483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 38 - 310
Target Start/End: Original strand, 33992731 - 33993003
Alignment:
| Q |
38 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
137 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||| ||||||||||| || | |||||||| |||||| || |
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|
| T |
33992731 |
aaaatgagtaaactaaaagttcttataatcacaaactacagtttccatccatgtgaactgaacaactttgagcttctcggttctttacagaacctggaaa |
33992830 |
T |
|
| Q |
138 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaa |
237 |
Q |
| |
|
||| ||||| |||||||||| || |||||||||||||||||||||| ||||| ||||||||| || ||||||||||| |||| ||||||||| ||||| |
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|
| T |
33992831 |
aaatcagactagagcgaattttggtcccttccttcggcacattgaagaatctgaaaaaactatctctctacatgtgtaacacaatactggcttttgaaaa |
33992930 |
T |
|
| Q |
238 |
gggtagcgtcctaatttcagatgcatttccatatctagaagaattgaacattgattactgcaaatatatggtg |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
33992931 |
gggtagcatcctaatttcagatgcatttccaaatctagaagaattgaacattgattactgcaaagatttggtg |
33993003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 29 - 294
Target Start/End: Original strand, 33914024 - 33914289
Alignment:
| Q |
29 |
ttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacaca |
128 |
Q |
| |
|
|||| |||||||||||| ||||||| || ||| ||| ||| ||| | ||||| | ||||||| |||||| || ||||||||| || ||||||| || |
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|
| T |
33914024 |
ttgaaggagaaaatgagcaaactaagagctcttatagtcataaatcatggtttacgcccttctgtactgaacaattttgagctaattagctctttatcca |
33914123 |
T |
|
| Q |
129 |
acctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggc |
228 |
Q |
| |
|
|||||||| |||| || || ||||| ||||||||||||||||| |||||| |||||| ||| | |||| |||| || |||||||||||||||||||| || |
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|
| T |
33914124 |
acctgaaaagaatcaggctagagcggatttctgttccttcctttggcacaatgaagaatctcaaaaaattatccctctacatgtgtaatacaagactagc |
33914223 |
T |
|
| Q |
229 |
tttcgaaaagggtagcgtcctaatttcagatgcatttccatatctagaagaattgaacattgatta |
294 |
Q |
| |
|
||| |||||||||||| |||||||||||||| ||||| || ||||||| |||| ||||||||| |
|
|
| T |
33914224 |
ttttgaaaagggtagcatcctaatttcagatttgtttcctaatttagaagatttgagcattgatta |
33914289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 33942741 - 33943012
Alignment:
| Q |
29 |
ttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacaca |
128 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||| ||| ||| ||| | ||||| | |||||||||||||| || ||||||||||| ||||||| || |
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|
| T |
33942741 |
ttgatggagaaaatgaacaaacttaaagctcttatagtcataaatcatggtttacgcccttctgaactgaacaatcttgagctacttagctctttatcca |
33942840 |
T |
|
| Q |
129 |
acctgaaacgaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggc |
228 |
Q |
| |
|
|||| ||| |||| || || ||| | ||||||||||||||||| ||||||||||||| ||| | |||| |||| || |||||||||||||||||||| || |
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|
| T |
33942841 |
accttaaaagaatcaggctagagaggatttctgttccttcctttggcacattgaagaatcttaaaaaattatccctctacatgtgtaatacaagactcgc |
33942940 |
T |
|
| Q |
229 |
tttcgaaaagggtagcgtcctaatttcagatgcatttccatatctagaagaattgaacattgattactgcaa |
300 |
Q |
| |
|
||| |||||||| ||| |||||||||| || |||||| || ||||||| |||| ||| ||||| ||||| |
|
|
| T |
33942941 |
ttttgaaaagggcagcatcctaatttccgacttatttcctaatttagaagatttgagcatggattattgcaa |
33943012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 244
Target Start/End: Complemental strand, 8277541 - 8277342
Alignment:
| Q |
38 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||| |||| ||||| ||| |
|
|
| T |
8277541 |
aaaatgagtaaactaaaagttctgataatcacaaactacagtttccatccttctaaactgaataacattgagct-------tctctacagaacctaaaaa |
8277449 |
T |
|
| Q |
138 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaagactggctttcgaaaa |
237 |
Q |
| |
|
|| | ||| | ||||| ||||| ||||| ||| ||| ||||||||||| |||||||||| |||| | |||||||||||||||||| || |||| |||| |
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|
| T |
8277448 |
gagtcagattagagcggatttccgttccatccctcgacacattgaagaatctgagaaaattatctgtctacatgtgtaatacaagaatgacttttgaaat |
8277349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 8276008 - 8275944
Alignment:
| Q |
246 |
tcctaatttcagatgcatttccatatctagaagaattgaacattgattactgcaaatatatggtg |
310 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
8276008 |
tcctaatttcagatgcatttccaaatcctgaagaattgaacattgattcctgcaaagatttggtg |
8275944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 27911046 - 27910976
Alignment:
| Q |
27 |
agttgatggagaaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactg |
97 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| | ||| || ||||| ||||||||||||||| |
|
|
| T |
27911046 |
agttgatggagaaaatgagcaaactaaaagttctcataataagaaattatggtttgcatccttctgaactg |
27910976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 6742977 - 6742793
Alignment:
| Q |
38 |
aaaatgagtaaactaaaagttctgataatcacaaactacggtttccatccttctgaactgaataactttgagctacttgactctttacacaacctgaaac |
137 |
Q |
| |
|
|||||||| ||||| |||||| | ||| ||||||| || |||||||||| ||||||| | | || ||||||||||||| |||||| ||||||||| |
|
|
| T |
6742977 |
aaaatgagcaaactgaaagttttaatagtcacaaattatggtttccatcgttctgaattcaccaagtttgagctacttggttctttatcaaacctgaaaa |
6742878 |
T |
|
| Q |
138 |
gaattagactggagcgaatttctgttccttccttcggcacattgaagagtctgagaaaactatcactttacatgtgtaatacaag |
222 |
Q |
| |
|
||| ||| ||||| |||| || |||| ||| ||| |||||||| |||| |||||||| | ||| | ||||| |||||||| |
|
|
| T |
6742877 |
taataagattggagaaggtttcagtcccttgcttgtgcaaattgaagaatctgcgaaaactaacccttcatatgtgcaatacaag |
6742793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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