View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_2D_high_11 (Length: 341)
Name: NF2853_2D_high_11
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 2572747 - 2572423
Alignment:
| Q |
1 |
ttgcttgaaggttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2572747 |
ttgcttgaaggttccatcaggaaaaacagtggcattggtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatcca |
2572648 |
T |
|
| Q |
101 |
attggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2572647 |
attggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgt |
2572548 |
T |
|
| Q |
201 |
ttgcaacaagcattaaggagaatatactctttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2572547 |
ttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcat |
2572448 |
T |
|
| Q |
301 |
ttcattgttgccacaaggatatgat |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2572447 |
ttcattgttgccacaaggatatgat |
2572423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2448593 - 2448917
Alignment:
| Q |
1 |
ttgcttgaaggttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2448593 |
ttgcttgaaggttccatcaggaaaaacagtggcattagtaggagaaagtggttcaggaaaatcaacagttgtatcacttttgcaaagattttatgatcca |
2448692 |
T |
|
| Q |
101 |
attggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2448693 |
attggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgt |
2448792 |
T |
|
| Q |
201 |
ttgcaacaagcattaaggagaatatactctttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2448793 |
ttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaatgctcataatttcat |
2448892 |
T |
|
| Q |
301 |
ttcattgttgccacaaggatatgat |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2448893 |
ttcattgttgccacaaggatatgat |
2448917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 2620008 - 2620325
Alignment:
| Q |
8 |
aaggttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatccaattggtg |
107 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2620008 |
aaggttccatcagggaaaacggttgcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatccaattggtg |
2620107 |
T |
|
| Q |
108 |
gagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2620108 |
gagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaac |
2620207 |
T |
|
| Q |
208 |
aagcattaaggagaatatactctttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattg |
307 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2620208 |
aagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattg |
2620307 |
T |
|
| Q |
308 |
ttgccacaaggatatgat |
325 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2620308 |
ttgccacaaggatatgat |
2620325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2432726 - 2433050
Alignment:
| Q |
1 |
ttgcttgaaggttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatcca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2432726 |
ttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacggttgtatcacttttacaaagattttatgatcca |
2432825 |
T |
|
| Q |
101 |
attggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2432826 |
attggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgt |
2432925 |
T |
|
| Q |
201 |
ttgcaacaagcattaaggagaatatactctttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2432926 |
ttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaatgctcataatttcat |
2433025 |
T |
|
| Q |
301 |
ttcattgttgccacaaggatatgat |
325 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
2433026 |
atcaatgttgccacaaggatatgat |
2433050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2586311 - 2586635
Alignment:
| Q |
1 |
ttgcttgaaggttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatcca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2586311 |
ttgcttaaaggttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttgcaaagattttatgatcca |
2586410 |
T |
|
| Q |
101 |
attggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2586411 |
attggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgt |
2586510 |
T |
|
| Q |
201 |
ttgcaacaagcattaaggagaatatactctttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcat |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2586511 |
ttgcaacaagcatcaaggagaatatactttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaatgctcataatttcat |
2586610 |
T |
|
| Q |
301 |
ttcattgttgccacaaggatatgat |
325 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
2586611 |
ttcaatgttgccacaaggatatgat |
2586635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 325
Target Start/End: Complemental strand, 2677576 - 2677259
Alignment:
| Q |
8 |
aaggttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatccaattggtg |
107 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2677576 |
aaggttccatcagggaaaacggttgcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttgcaaagattttatgatccaattggtg |
2677477 |
T |
|
| Q |
108 |
gagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2677476 |
gagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaac |
2677377 |
T |
|
| Q |
208 |
aagcattaaggagaatatactctttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattg |
307 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
2677376 |
aagcattatggagaatatactttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaatgctcataatttcatttcaatg |
2677277 |
T |
|
| Q |
308 |
ttgccacaaggatatgat |
325 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2677276 |
ttgccacaaggatatgat |
2677259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 2600313 - 2600001
Alignment:
| Q |
13 |
tccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatccaattggtggagag |
112 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2600313 |
tccatcagggaaaacggttgcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatccaattggtggagag |
2600214 |
T |
|
| Q |
113 |
attcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2600213 |
attcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagca |
2600114 |
T |
|
| Q |
213 |
ttaaggagaatatactctttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgcc |
312 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
2600113 |
ttaaggagaatatactttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaatgctcataatttcatttcattgttgcc |
2600014 |
T |
|
| Q |
313 |
acaaggatatgat |
325 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2600013 |
acaagtatatgat |
2600001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 2645145 - 2644821
Alignment:
| Q |
1 |
ttgcttgaaggttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2645145 |
ttgcttgaaggttccatcaggaaaaacagtggcattagtaggagaaagtggttcaggaaaatcaacagttgtatcacttttgcaaagattttatgatcca |
2645046 |
T |
|
| Q |
101 |
attggtggagagattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
2645045 |
atttgtggagagattcttcttgatggagttgccattcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgt |
2644946 |
T |
|
| Q |
201 |
ttgcaacaagcattaaggagaatatactctttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2644945 |
ttgcaacaagcattaaggagaatatactttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaatgctcataatttcat |
2644846 |
T |
|
| Q |
301 |
ttcattgttgccacaaggatatgat |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2644845 |
ttcattgttgccacaaggatatgat |
2644821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 17872910 - 17872619
Alignment:
| Q |
12 |
ttccatcaggaaaaacagtggcattagtaggaggaagtggttcaggaaaatcaacagttgtatcacttttacaaagattttatgatccaattggtggaga |
111 |
Q |
| |
|
||||| |||| |||||| ||||||| || || | ||||||||||| |||||||| || |||| | || ||| | |||||||||||||| ||||| || |
|
|
| T |
17872910 |
ttccagcagggaaaacaatggcattggttggtgagagtggttcagggaaatcaactgtgatatctttattgcaacggttttatgatccaatcggtggtga |
17872811 |
T |
|
| Q |
112 |
gattcttcttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagc |
211 |
Q |
| |
|
||| | |||||||||||| ||||||| ||| ||||| |||| |||||||||||| ||||| || || ||||||||||||||||| |||||||||||| |
|
|
| T |
17872810 |
gatacgtcttgatggagtagctattcgtaacttgcagattaaatggcttaggtcaatgatggggttggttagtcaagaacctgctttatttgcaacaagc |
17872711 |
T |
|
| Q |
212 |
attaaggagaatatactctttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttc |
303 |
Q |
| |
|
||||| ||||||||| | ||||| | ||| |||||||| | || || ||||| || ||||| ||| || ||||||||| |||||||||| |
|
|
| T |
17872710 |
attaaagagaatataatttttggtaaagaagatgctaccgaagatgagattgttgaagctgcgaaaatttgtaatgctcatgatttcatttc |
17872619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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