View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_2D_high_19 (Length: 302)
Name: NF2853_2D_high_19
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 37163025 - 37163315
Alignment:
| Q |
1 |
acttcaacatactcatgataaacaccctccttgatatgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttcttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37163025 |
acttcaacatactcatgataaacaccctccttgatatgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttcttaa |
37163124 |
T |
|
| Q |
101 |
actttccactaccatctttagccacaaccacattagccttgagtttatgttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcaccaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37163125 |
actttccactaccatctttagccacaaccacattagccttgagtttatgttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcaccaac |
37163224 |
T |
|
| Q |
201 |
ccaagaaggaacatcattaacatcatctttagcaacaacttgttcacccacatactcgcccttataatcatcaataagttgatgtccatct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
37163225 |
ccaagaaggaacatcattaacatcatctttagcaacaacttgttcacccacatactcgcccttataatcatcaataagacgacgtccatct |
37163315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 46315159 - 46315021
Alignment:
| Q |
1 |
acttcaacatactcatgataaacaccctccttgatatgaataacaaaaggtttttggttcttctttggaacctgtttcaaagcatcattgattttcttga |
100 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| | ||||||||| || || ||| ||||| ||||| || || | ||| ||| ||||| | ||| |
|
|
| T |
46315159 |
acttcaacatactctttataaacaccctccttgatgtaaataacaaatggcttcaagtttttcttgggaacatgcttaagagcctcagtgattgtggtga |
46315060 |
T |
|
| Q |
101 |
actttccactaccatctttagccacaaccacattagcct |
139 |
Q |
| |
|
| |||||||| ||||| ||||| ||||| |||| ||||| |
|
|
| T |
46315059 |
aatttccacttccatccttagcaacaacaacatgagcct |
46315021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University