View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_high_20 (Length: 302)
Name: NF2853_2D_high_20
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 50 - 291
Target Start/End: Original strand, 37163074 - 37163315
Alignment:
| Q |
50 |
gtttttggttcttctttggaacctgtttcaaagcatcattgattttcttgaactttccactaccatctttagccacaaccacattagccttgagtttatg |
149 |
Q |
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| T |
37163074 |
gtttttggttcttctttggaacctgtttcaaagcatcattgattttcttaaactttccactaccatctttagccacaaccacattagccttgagtttatg |
37163173 |
T |
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| Q |
150 |
ttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcaccaacccaagaaggaacatcattaacatcatctttagcaacaacttgttcaccc |
249 |
Q |
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| T |
37163174 |
ttgatttacatgaagaagtcttcgaacaccaacacttaaaccatcaccaacccaagaaggaacatcattaacatcatctttagcaacaacttgttcaccc |
37163273 |
T |
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| Q |
250 |
acatactcgcccttataatcatcaataagttgatgtccatct |
291 |
Q |
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| T |
37163274 |
acatactcgcccttataatcatcaataagacgacgtccatct |
37163315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 37163049 - 37162993
Alignment:
| Q |
1 |
gtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgg |
57 |
Q |
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| T |
37163049 |
gtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgg |
37162993 |
T |
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