View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_2D_high_21 (Length: 299)

Name: NF2853_2D_high_21
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_2D_high_21
NF2853_2D_high_21
[»] chr8 (22 HSPs)
chr8 (9-280)||(5264314-5264585)
chr8 (238-281)||(12988427-12988470)
chr8 (237-280)||(16852338-16852381)
chr8 (236-279)||(19703523-19703566)
chr8 (239-280)||(18540298-18540339)
chr8 (239-280)||(23874417-23874458)
chr8 (241-280)||(2203494-2203533)
chr8 (241-280)||(3624582-3624621)
chr8 (237-272)||(3826820-3826855)
chr8 (239-280)||(20994493-20994534)
chr8 (241-281)||(8794379-8794419)
chr8 (238-273)||(44780156-44780191)
chr8 (239-273)||(30483926-30483960)
chr8 (239-281)||(33017214-33017256)
chr8 (239-280)||(968362-968403)
chr8 (238-279)||(8484998-8485039)
chr8 (239-276)||(11518916-11518953)
chr8 (237-278)||(18897164-18897205)
chr8 (238-278)||(22268970-22269010)
chr8 (238-278)||(28566104-28566144)
chr8 (238-278)||(28573727-28573767)
chr8 (198-238)||(43236543-43236583)
[»] chr1 (14 HSPs)
chr1 (238-280)||(36371469-36371511)
chr1 (237-280)||(4566546-4566589)
chr1 (239-280)||(9165230-9165271)
chr1 (241-280)||(33700808-33700847)
chr1 (239-273)||(31794306-31794340)
chr1 (243-279)||(17745292-17745328)
chr1 (237-273)||(21547522-21547558)
chr1 (237-272)||(40257397-40257432)
chr1 (239-273)||(19528369-19528403)
chr1 (239-280)||(50901581-50901623)
chr1 (239-280)||(51703779-51703820)
chr1 (239-279)||(2219972-2220012)
chr1 (237-273)||(8904412-8904448)
chr1 (238-278)||(39012290-39012330)
[»] chr5 (19 HSPs)
chr5 (239-280)||(7918504-7918545)
chr5 (238-280)||(34984805-34984847)
chr5 (239-280)||(21549172-21549213)
chr5 (239-276)||(25627057-25627094)
chr5 (237-280)||(30883233-30883276)
chr5 (238-280)||(14285160-14285202)
chr5 (239-280)||(21589288-21589329)
chr5 (237-273)||(16436616-16436652)
chr5 (237-280)||(87458-87501)
chr5 (239-278)||(892511-892550)
chr5 (238-273)||(22737081-22737116)
chr5 (238-273)||(26078093-26078128)
chr5 (238-273)||(26598523-26598558)
chr5 (239-273)||(5390892-5390926)
chr5 (239-273)||(29075781-29075815)
chr5 (239-272)||(3252332-3252365)
chr5 (239-276)||(19043458-19043495)
chr5 (239-279)||(3915034-3915074)
chr5 (233-273)||(43241724-43241764)
[»] chr2 (14 HSPs)
chr2 (239-280)||(42922414-42922455)
chr2 (237-280)||(42602552-42602595)
chr2 (239-280)||(40416425-40416466)
chr2 (239-280)||(42327430-42327471)
chr2 (237-280)||(29503269-29503312)
chr2 (237-279)||(4060250-4060292)
chr2 (239-276)||(11062360-11062397)
chr2 (238-279)||(37480074-37480115)
chr2 (237-273)||(1729814-1729850)
chr2 (239-273)||(16381696-16381730)
chr2 (237-267)||(34041636-34041666)
chr2 (239-268)||(9318121-9318150)
chr2 (240-273)||(16918620-16918653)
chr2 (240-280)||(37756006-37756046)
[»] chr7 (20 HSPs)
chr7 (234-278)||(45559195-45559239)
chr7 (239-280)||(25021370-25021411)
chr7 (239-280)||(26459445-26459486)
chr7 (239-280)||(39631844-39631885)
chr7 (239-280)||(42836036-42836077)
chr7 (239-279)||(39499755-39499795)
chr7 (239-272)||(24513797-24513830)
chr7 (239-280)||(30442488-30442529)
chr7 (239-279)||(26199509-26199549)
chr7 (238-278)||(35328911-35328951)
chr7 (238-278)||(43215183-43215223)
chr7 (239-278)||(25956329-25956368)
chr7 (238-273)||(41487361-41487396)
chr7 (238-280)||(23552117-23552159)
chr7 (238-272)||(30579334-30579368)
chr7 (239-281)||(33869479-33869521)
chr7 (242-272)||(45976966-45976996)
chr7 (239-280)||(17113795-17113836)
chr7 (239-272)||(18363696-18363729)
chr7 (237-273)||(17041054-17041090)
[»] chr3 (21 HSPs)
chr3 (239-279)||(16354928-16354968)
chr3 (238-276)||(27093400-27093438)
chr3 (236-280)||(8051211-8051255)
chr3 (238-274)||(26988995-26989031)
chr3 (239-281)||(14186648-14186690)
chr3 (238-273)||(10499151-10499186)
chr3 (239-278)||(11092206-11092245)
chr3 (239-278)||(37788502-37788541)
chr3 (238-273)||(46518627-46518662)
chr3 (239-273)||(203090-203124)
chr3 (239-273)||(4222141-4222175)
chr3 (238-280)||(9832496-9832538)
chr3 (239-273)||(24459990-24460024)
chr3 (239-273)||(31789012-31789046)
chr3 (242-280)||(53412948-53412986)
chr3 (239-272)||(8170672-8170705)
chr3 (242-271)||(10969938-10969967)
chr3 (239-267)||(8796140-8796168)
chr3 (238-278)||(26871541-26871581)
chr3 (237-273)||(30311304-30311340)
chr3 (237-273)||(36720379-36720415)
[»] scaffold0002 (1 HSPs)
scaffold0002 (242-280)||(95006-95044)
[»] chr6 (5 HSPs)
chr6 (238-280)||(12188338-12188380)
chr6 (238-280)||(33549103-33549145)
chr6 (238-278)||(22708-22748)
chr6 (232-276)||(13330080-13330124)
chr6 (236-276)||(15497076-15497116)
[»] chr4 (18 HSPs)
chr4 (239-280)||(37109386-37109427)
chr4 (238-273)||(27965552-27965587)
chr4 (242-281)||(33438512-33438551)
chr4 (242-280)||(7292833-7292871)
chr4 (242-279)||(41683752-41683789)
chr4 (239-272)||(46545711-46545744)
chr4 (239-280)||(55427235-55427276)
chr4 (239-279)||(1730525-1730565)
chr4 (237-280)||(2185067-2185111)
chr4 (238-273)||(51250564-51250599)
chr4 (239-273)||(9241067-9241101)
chr4 (239-273)||(19238619-19238653)
chr4 (239-273)||(37443702-37443736)
chr4 (238-280)||(37720249-37720291)
chr4 (238-271)||(21434810-21434843)
chr4 (238-278)||(7949491-7949531)
chr4 (237-273)||(19680830-19680866)
chr4 (238-278)||(29195094-29195134)
[»] scaffold0118 (1 HSPs)
scaffold0118 (239-272)||(41676-41709)
[»] scaffold0180 (1 HSPs)
scaffold0180 (250-280)||(19997-20027)
[»] scaffold0258 (1 HSPs)
scaffold0258 (239-280)||(15358-15399)
[»] scaffold0070 (1 HSPs)
scaffold0070 (239-280)||(42555-42596)
[»] scaffold0032 (1 HSPs)
scaffold0032 (239-280)||(112282-112323)
[»] scaffold0172 (1 HSPs)
scaffold0172 (238-270)||(32814-32846)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 5264314 - 5264585
Alignment:
Q  9 gactgatatgaaggataatgcaacagttgagtaaaagagctaccgtttcaaagtgaaaaatagagaatgtaacnnnnnnnnnnnnnnnntagagtgtgaa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |                |||||||||||    
T  5264314 gactgaaatgaaggataatgcaacagttgagtaaaagagctaccgtttcaaagtgaaaaatagagaatgtagcaaaaaaaagtaaaaaatagagtgtgaa 5264413  T
Q  109 ggcagaacagtgttaacaatatagagaatcagagaataataaaggaggccagcgttttttagaagagcaaagcttcggaacacaaacattactctaagaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  5264414 ggcagaacagtgttaacaatatagagaatcagagaataataaaggaggccagcattttttagaaaagcaaagcttcggaacacaaacattactctaagaa 5264513  T
Q  209 tatatagtgaaatataaatacactaaactaaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5264514 tatatagtgaaatataaatacactaaactaaacccacttgggttggcctagtggtattggcttggaacctgg 5264585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 12988427 - 12988470
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctgga 281  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  12988427 aaacccacttggattggcctagtggtattggcttggaacctgga 12988470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 16852338 - 16852381
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  16852338 taaacccacttgggttggcctagtggtattggcttgggacctgg 16852381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 19703566 - 19703523
Alignment:
Q  236 ctaaacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  19703566 ctaaacccacttgggttggcctagtggtattggcttgggacctg 19703523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 18540298 - 18540339
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  18540298 aacccacttgggttggcctagtggtattggcttgggacctgg 18540339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 23874458 - 23874417
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  23874458 aacccacttgggttggcctagtggtattggcttgggacctgg 23874417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 2203494 - 2203533
Alignment:
Q  241 cccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgggacctgg 2203533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 3624582 - 3624621
Alignment:
Q  241 cccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgg 3624621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 3826855 - 3826820
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttg 272  Q
    ||||||||||||||||||||||||||||||||||||    
T  3826855 taaacccacttgggttggcctagtggtattggcttg 3826820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 20994534 - 20994493
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  20994534 aacccacttgggttggcctagtggtattgacttgggacctgg 20994493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 8794419 - 8794379
Alignment:
Q  241 cccacttgggttggcctagtggtattggcttggaacctgga 281  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  8794419 cccacttggattggcatagtggtattggcttggaacctgga 8794379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 44780191 - 44780156
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44780191 aaacccacttgggttggcctagtggcattggcttgg 44780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 30483960 - 30483926
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||| ||||||||||||||||    
T  30483960 aacccacttgggttggcccagtggtattggcttgg 30483926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 33017214 - 33017256
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgga 281  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  33017214 aacccacttgggttggccttgtcatattggcttggaacctgga 33017256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 968362 - 968403
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||| |||||||| ||||||||||||||| ||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgg 968403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 8484998 - 8485039
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    |||||||||||||||||||| |||||||| |||||| |||||    
T  8484998 aaacccacttgggttggcctggtggtatttgcttgggacctg 8485039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 11518953 - 11518916
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaac 276  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  11518953 aacccacttgggttagcctagtggtataggcttggaac 11518916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 18897164 - 18897205
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    ||||||||||||||||||||||||||| |||| |||| ||||    
T  18897164 taaacccacttgggttggcctagtggtgttggtttgggacct 18897205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 22269010 - 22268970
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||||||||||||||||| ||||| ||||||||| ||||    
T  22269010 aaacccacttgggttggcctggtggtgttggcttgggacct 22268970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 28566104 - 28566144
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||||||||||||| |||||||||||||| |||| ||||    
T  28566104 aaacccacttgggttgacctagtggtattggtttgggacct 28566144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 28573727 - 28573767
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||||||||||||| |||||||||||||| |||| ||||    
T  28573727 aaacccacttgggttgacctagtggtattggtttgggacct 28573767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 43236543 - 43236583
Alignment:
Q  198 tactctaagaatatatagtgaaatataaatacactaaacta 238  Q
    |||||| ||||| |||||||||||||||||| |||||||||    
T  43236543 tactctgagaatgtatagtgaaatataaatagactaaacta 43236583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 36371469 - 36371511
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36371469 aaacccacttgggttggcctagtggtattggcttggaacctgg 36371511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 4566546 - 4566589
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  4566546 taaacccacttgggttggcctagtgatattggcttggaacctgg 4566589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 9165271 - 9165230
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  9165271 aacccacttgggttggcctagtggtattggcttgggacctgg 9165230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 33700847 - 33700808
Alignment:
Q  241 cccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  33700847 cccacttgggttggcctagtggtattggcttggaatctgg 33700808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 31794340 - 31794306
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||||||||||||||||||||    
T  31794340 aacccacttgggttggcctagtggtattggcttgg 31794306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 17745328 - 17745292
Alignment:
Q  243 cacttgggttggcctagtggtattggcttggaacctg 279  Q
    ||||||||||||||||||||||||||||||| |||||    
T  17745328 cacttgggttggcctagtggtattggcttgggacctg 17745292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 21547558 - 21547522
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||| ||||||||||||||||||||||||||||||    
T  21547558 taaaccgacttgggttggcctagtggtattggcttgg 21547522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 40257397 - 40257432
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttg 272  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40257397 taaacccacttgggttggcctggtggtattggcttg 40257432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 19528403 - 19528369
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||| |||||||||||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttgg 19528369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 50901581 - 50901623
Alignment:
Q  239 aacccacttgggttggcctagtggt-attggcttggaacctgg 280  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  50901581 aacccacttgggttggcctagtggtaattggcttgggacctgg 50901623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 51703779 - 51703820
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||| ||||||||| |||||||||||||||||||| ||||    
T  51703779 aacccatttgggttggtctagtggtattggcttggaatctgg 51703820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 2219972 - 2220012
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    |||||||||||||||  || |||||||||||||||||||||    
T  2219972 aacccacttgggttgttctggtggtattggcttggaacctg 2220012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 8904412 - 8904448
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||||||||| |||||| |||||    
T  8904412 taaacccacttgggttggcctagtagtattgacttgg 8904448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 39012290 - 39012330
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||||||| ||||||||||||||| ||||||||| ||||    
T  39012290 aaacccactttggttggcctagtggtgttggcttgggacct 39012330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 7918545 - 7918504
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7918545 aacccacttgggttggcctagtggtattggcttggaacctgg 7918504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 34984805 - 34984847
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  34984805 aaacccacttgggttggtctagtggtattggcttggaacctgg 34984847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 21549213 - 21549172
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  21549213 aacccacttgggttggcctagtggtattggcttgggacctgg 21549172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 25627057 - 25627094
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaac 276  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25627057 aacccacttgggttggcctagtggtattggcttggaac 25627094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 30883276 - 30883233
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  30883276 taaacccacttgggttggtctagtggtattggcttgggacctgg 30883233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 14285160 - 14285202
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  14285160 aaacccacttgggttggccgagtggaattggcttggaacctgg 14285202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 21589288 - 21589329
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  21589288 aacccacttgggttggcctggtggtattggcttgggacctgg 21589329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 16436616 - 16436652
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||| |||||||||||||||||||||||||||||||    
T  16436616 taaactcacttgggttggcctagtggtattggcttgg 16436652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 87501 - 87458
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||    
T  87501 taaacccacttcggttggcctagtggtattgccttggaatctgg 87458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 892550 - 892511
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  892550 aacccatttgggttggcctagtggtattggcttgggacct 892511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 22737081 - 22737116
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||| ||||||||||||||||||    
T  22737081 aaacccacttgggttggtctagtggtattggcttgg 22737116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 26078128 - 26078093
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26078128 aaacccacttgggttggcctagtggtattggtttgg 26078093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 26598523 - 26598558
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||| |||||||||||||||||||||||    
T  26598523 aaacccacttggattggcctagtggtattggcttgg 26598558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 5390926 - 5390892
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||| ||||||||||||||||||||||||||||    
T  5390926 aacccatttgggttggcctagtggtattggcttgg 5390892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 29075781 - 29075815
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||| ||||||||||||||||||||    
T  29075781 aacccacttgggtttgcctagtggtattggcttgg 29075815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 3252365 - 3252332
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttg 272  Q
    ||||||||||||||||||||||||||||| ||||    
T  3252365 aacccacttgggttggcctagtggtattgacttg 3252332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 19043458 - 19043495
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaac 276  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  19043458 aacccacttgggttggcctagtgctattgacttggaac 19043495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 3915074 - 3915034
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    |||| |||||||||||||| |||||||| ||||||||||||    
T  3915074 aacctacttgggttggcctggtggtattagcttggaacctg 3915034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 43241764 - 43241724
Alignment:
Q  233 aaactaaacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||| |||||||||||| |||||||||||| |||||    
T  43241764 aaactaaactcacttgggttggtctagtggtattgacttgg 43241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 42922414 - 42922455
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42922414 aacccacttgggttggcctagtggtattggcttggaacctgg 42922455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 42602552 - 42602595
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  42602552 taaacccacttgggttggcctagtggtattggcttgggacctgg 42602595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 40416466 - 40416425
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  40416466 aacccacttgggttggcctagtggtattgacttggaacctgg 40416425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 42327471 - 42327430
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgg 42327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 29503269 - 29503312
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  29503269 taaacccacttgggttggcctagtggtattggtttgggacctgg 29503312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 4060292 - 4060250
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  4060292 taaacccacttgggttggcctagtggtattggtttgaaacctg 4060250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 11062360 - 11062397
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaac 276  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  11062360 aacccacttgggttggcctagtgatattggcttggaac 11062397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 37480074 - 37480115
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  37480074 aaacccacttgggttggcctggtggtattggcttgggacctg 37480115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 1729814 - 1729850
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||| ||||||||||||||||||    
T  1729814 taaacccacttgggttgggctagtggtattggcttgg 1729850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 16381730 - 16381696
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||||||||||| |||||||    
T  16381730 aacccacttgggttggcctagtggtataggcttgg 16381696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 34041666 - 34041636
Alignment:
Q  237 taaacccacttgggttggcctagtggtattg 267  Q
    |||||||||||||||||||||||||||||||    
T  34041666 taaacccacttgggttggcctagtggtattg 34041636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 9318150 - 9318121
Alignment:
Q  239 aacccacttgggttggcctagtggtattgg 268  Q
    ||||||||||||||||||||||||||||||    
T  9318150 aacccacttgggttggcctagtggtattgg 9318121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 16918653 - 16918620
Alignment:
Q  240 acccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||||||||||||| ||||    
T  16918653 acccacttgggttggcctagtggtattggtttgg 16918620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 37756046 - 37756006
Alignment:
Q  240 acccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||| | ||||||||||||||| ||||||    
T  37756046 acccacttgggttggcttggtggtattggcttgggacctgg 37756006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 45559195 - 45559239
Alignment:
Q  234 aactaaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  45559195 aacttaacccacttgggttggcctagtggtattggcttggaacct 45559239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 25021411 - 25021370
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  25021411 aacccacttgggttggcctagtggtattggcttgggacctgg 25021370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 26459486 - 26459445
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  26459486 aacccacttgggttggcctagtggtattggcttgggacctgg 26459445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 39631844 - 39631885
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  39631844 aacccacttgggttggcctagtggtattggcttgggacctgg 39631885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 42836077 - 42836036
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  42836077 aacccacttgggttggcctagtggtattggcttgggacctgg 42836036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 39499795 - 39499755
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  39499795 aacccacttgggttggcctagtggtattggcttgggacctg 39499755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 24513797 - 24513830
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttg 272  Q
    ||||||||||||||||||||||||||||||||||    
T  24513797 aacccacttgggttggcctagtggtattggcttg 24513830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 30442488 - 30442529
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||| |||||||||||||||| ||||||    
T  30442488 aacccacttgggttggcccagtggtattggcttgggacctgg 30442529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 26199509 - 26199549
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  26199509 aacccacttgagttggcctagtggtattggcttgggacctg 26199549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 35328951 - 35328911
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  35328951 aaacccacttgggttggcctggtggtgttggcttggaacct 35328911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 43215183 - 43215223
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  43215183 aaacccacttgggttggtctagtggtattggcttgggacct 43215223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 25956368 - 25956329
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  25956368 aacccatttgggttggcctagtggtattggcttgggacct 25956329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 41487361 - 41487396
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||||| |||||||||||||||    
T  41487361 aaacccacttgggttggcctggtggtattggcttgg 41487396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 23552117 - 23552159
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  23552117 aaacccacttgggttggcctagtgctattgacttgggacctgg 23552159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 30579334 - 30579368
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttg 272  Q
    |||||||||||||||||||| ||||||||||||||    
T  30579334 aaacccacttgggttggcctggtggtattggcttg 30579368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 33869521 - 33869479
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgga 281  Q
    |||||||||||||||||||||| |||||||||||  |||||||    
T  33869521 aacccacttgggttggcctagtagtattggcttgagacctgga 33869479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 272
Target Start/End: Complemental strand, 45976996 - 45976966
Alignment:
Q  242 ccacttgggttggcctagtggtattggcttg 272  Q
    |||||||||||||||||||||||||||||||    
T  45976996 ccacttgggttggcctagtggtattggcttg 45976966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 17113795 - 17113836
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||| ||||||||| |||||||||| ||||||||    
T  17113795 aacccacttggggtggcctagttgtattggcttagaacctgg 17113836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 18363696 - 18363729
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttg 272  Q
    ||||||||||||||||||||||||||| ||||||    
T  18363696 aacccacttgggttggcctagtggtataggcttg 18363729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 17041090 - 17041054
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  17041090 taaacccacttgggttggtctagtggcattggcttgg 17041054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 16354968 - 16354928
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16354968 aacccacttgggttggcctagtggtattggcttggaacctg 16354928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 27093438 - 27093400
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaac 276  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27093438 aaacccacttgggttggcctagtggtattggcttggaac 27093400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 8051211 - 8051255
Alignment:
Q  236 ctaaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||    
T  8051211 ctaaacccacttgggttggcctggtggtattggcttgggacctgg 8051255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 26988995 - 26989031
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgga 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  26988995 aaacccacttgggttggcctagtggtattggcttgga 26989031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 14186648 - 14186690
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgga 281  Q
    ||||||||||||||||||||||||||||| ||||| |||||||    
T  14186648 aacccacttgggttggcctagtggtattgtcttgggacctgga 14186690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 10499186 - 10499151
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||||| |||||||||||||||    
T  10499186 aaacccacttgggttggcctggtggtattggcttgg 10499151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 11092245 - 11092206
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacct 278  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  11092245 aacccacttgggttggcctagtggtgttggcttgggacct 11092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 37788541 - 37788502
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  37788541 aacccacttgggttggcccagtggtattgacttggaacct 37788502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 46518627 - 46518662
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||| |||||||||||||||||    
T  46518627 aaacccacttgggttggcatagtggtattggcttgg 46518662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 203090 - 203124
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||||||||||||| |||||    
T  203090 aacccacttgggttggcctagtggtattgacttgg 203124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 4222141 - 4222175
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||| |||||||||||||||||    
T  4222141 aacccacttgggttggcttagtggtattggcttgg 4222175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 9832496 - 9832538
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||||  ||||||||||||||| ||||||    
T  9832496 aaacccacttgggttggcccggtggtattggcttgggacctgg 9832538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 24459990 - 24460024
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||| |||||||||||||||    
T  24459990 aacccacttgggttggcctggtggtattggcttgg 24460024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 31789046 - 31789012
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||||||| |||||||||||    
T  31789046 aacccacttgggttggcctagtgttattggcttgg 31789012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 53412948 - 53412986
Alignment:
Q  242 ccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  53412948 ccacttgggttggtctagtggtattggcttgtaacctgg 53412986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 8170672 - 8170705
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttg 272  Q
    |||||| |||||||||||||||||||||||||||    
T  8170672 aacccatttgggttggcctagtggtattggcttg 8170705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 10969967 - 10969938
Alignment:
Q  242 ccacttgggttggcctagtggtattggctt 271  Q
    ||||||||||||||||||||||||||||||    
T  10969967 ccacttgggttggcctagtggtattggctt 10969938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 8796168 - 8796140
Alignment:
Q  239 aacccacttgggttggcctagtggtattg 267  Q
    |||||||||||||||||||||||||||||    
T  8796168 aacccacttgggttggcctagtggtattg 8796140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 26871581 - 26871541
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||||||||||||||||| ||||| ||||||||| ||||    
T  26871581 aaacccacttgggttggcctggtggtgttggcttgggacct 26871541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 30311304 - 30311340
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  30311304 taaacccacctgggttggcctagtggtataggcttgg 30311340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 36720379 - 36720415
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||| || |||||||||||||||    
T  36720379 taaacccacttgggttggtctggtggtattggcttgg 36720415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 95044 - 95006
Alignment:
Q  242 ccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||||||||||||||||||||||||    
T  95044 ccacttgggttggcctagtggtattggcttggaacctgg 95006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 12188380 - 12188338
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  12188380 aaacccacttgggttggcctagtggtattggcttgggacctgg 12188338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 33549103 - 33549145
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||| || ||||||||||||||| ||||||    
T  33549103 aaacccacttgggttggtctggtggtattggcttgggacctgg 33549145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 22748 - 22708
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    ||||||||||||||||| |||||||| ||||||||| ||||    
T  22748 aaacccacttgggttgggctagtggttttggcttgggacct 22708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 13330080 - 13330124
Alignment:
Q  232 taaactaaacccacttgggttggcctagtggtattggcttggaac 276  Q
    |||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  13330080 taaagtaaacccacttgggttgacctagtggtattgactttgaac 13330124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 15497116 - 15497076
Alignment:
Q  236 ctaaacccacttgggttggcctagtggtattggcttggaac 276  Q
    ||||||||||||||||||||||| || |||||| |||||||    
T  15497116 ctaaacccacttgggttggcctaatgatattggtttggaac 15497076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 37109427 - 37109386
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  37109427 aacccacttgggttggcctagtggtattggcttgggacctgg 37109386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 27965587 - 27965552
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||||||||||||||||||||    
T  27965587 aaacccacttgggttggcctagtggtattggcttgg 27965552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 33438551 - 33438512
Alignment:
Q  242 ccacttgggttggcctagtggtattggcttggaacctgga 281  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  33438551 ccacttgggttggtctagtggtattggcttggaacctgga 33438512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 7292871 - 7292833
Alignment:
Q  242 ccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  7292871 ccacttgggttggtctagtggtattggcttggaacctgg 7292833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 41683752 - 41683789
Alignment:
Q  242 ccacttgggttggcctagtggtattggcttggaacctg 279  Q
    |||||||||||| |||||||||||||||||||||||||    
T  41683752 ccacttgggttgacctagtggtattggcttggaacctg 41683789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 46545711 - 46545744
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttg 272  Q
    ||||||||||||||||||||||||||||||||||    
T  46545711 aacccacttgggttggcctagtggtattggcttg 46545744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 55427276 - 55427235
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  55427276 aacccacttgggttggcctggtggtattggcttgggacctgg 55427235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 1730565 - 1730525
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctg 279  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  1730565 aacccacttgggttgacctagtggtattggcttgggacctg 1730525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 2185111 - 2185067
Alignment:
Q  237 taaacccactt-gggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||    
T  2185111 taaacccacttcgggttggcctagtggtaatggcttggaacctgg 2185067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 51250599 - 51250564
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttgg 273  Q
    |||||||||||||||||||| |||||||||||||||    
T  51250599 aaacccacttgggttggcctggtggtattggcttgg 51250564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 9241101 - 9241067
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||| |||||||||||||||    
T  9241101 aacccacttgggttggcctggtggtattggcttgg 9241067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 19238653 - 19238619
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||||||| |||||||||||||||    
T  19238653 aacccacttgggttggcctggtggtattggcttgg 19238619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 37443702 - 37443736
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||||| |||||||||||||||||||    
T  37443702 aacccacttgggttgacctagtggtattggcttgg 37443736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 37720291 - 37720249
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||    
T  37720291 aaacccacttgggttggcctggtgttattggcttgggacctgg 37720249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 21434810 - 21434843
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggctt 271  Q
    ||||||| ||||||||||||||||||||||||||    
T  21434810 aaacccatttgggttggcctagtggtattggctt 21434843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 7949531 - 7949491
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    ||||||||||||| |||||||| ||||||||||||| ||||    
T  7949531 aaacccacttgggctggcctagcggtattggcttgggacct 7949491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 19680866 - 19680830
Alignment:
Q  237 taaacccacttgggttggcctagtggtattggcttgg 273  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  19680866 taaacccacttggattggcctagtggtattcgcttgg 19680830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 29195094 - 29195134
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggcttggaacct 278  Q
    |||||||||||||||||||| ||||| ||||||||| ||||    
T  29195094 aaacccacttgggttggcctggtggtgttggcttgggacct 29195134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 41709 - 41676
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttg 272  Q
    ||||||||||||||||||||||||||||||||||    
T  41709 aacccacttgggttggcctagtggtattggcttg 41676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 280
Target Start/End: Complemental strand, 20027 - 19997
Alignment:
Q  250 gttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||||||||||||||||||    
T  20027 gttggcctagtggtattggcttggaacctgg 19997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 15399 - 15358
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||||||||||||| || ||||||||||||||| ||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgg 15358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 42596 - 42555
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    |||||| |||||||||||||||||||||| ||||||| ||||    
T  42596 aacccagttgggttggcctagtggtattgacttggaatctgg 42555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 112282 - 112323
Alignment:
Q  239 aacccacttgggttggcctagtggtattggcttggaacctgg 280  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  112282 aacccacttgggttggcctggttgtattggcttggaatctgg 112323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 32846 - 32814
Alignment:
Q  238 aaacccacttgggttggcctagtggtattggct 270  Q
    |||||||||||||||||||| ||||||||||||    
T  32846 aaacccacttgggttggcctggtggtattggct 32814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University