View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_high_29 (Length: 224)
Name: NF2853_2D_high_29
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 20018840 - 20018625
Alignment:
| Q |
1 |
catctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatgatgttgatactcaactaaaaaatatggtattataaagttttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20018840 |
catctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccttgatgttgatactcaactaaaaaatatggtattataaagttttat |
20018741 |
T |
|
| Q |
101 |
gcgttttcatagtataaatgaaaagnnnnnnnnngtggattagctaaactagaggaacaatccgtcttttattaagataaattgtaaaatcccttttgaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20018740 |
gcgttttcatagtataaatgaaaagtttttttttgtggattagctaaactagaggaacaatccgtcttttattaagataacttgtaaaatcccttttgaa |
20018641 |
T |
|
| Q |
201 |
tcattatgatgtccat |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
20018640 |
tcattatgatgtccat |
20018625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20028828 - 20028704
Alignment:
| Q |
1 |
catctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatgatgttgatactcaactaaaaaatatggtattataaagttttat |
100 |
Q |
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||||||| ||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
20028828 |
catctgggctggctcagaatttggtgacagtcgtcaaggaatctgacactgacattgatgttgatgctcaactaaaaaatatggtattataatgttttat |
20028729 |
T |
|
| Q |
101 |
gcgttttcatagtataaatgaaaag |
125 |
Q |
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|| |||| ||| |||||||||||| |
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| T |
20028728 |
gcattttggtagcataaatgaaaag |
20028704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20009391 - 20009267
Alignment:
| Q |
1 |
catctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatgatgttgatactcaactaaaaaatatggtattataaagttttat |
100 |
Q |
| |
|
||||||| |||| |||||||| ||||||| ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20009391 |
catctgggatggctcagaatttagggacagtcgtcaaggaatctgacaatgacattgatgttgatgctcaactaaaaaatatggtattataaagttttat |
20009292 |
T |
|
| Q |
101 |
gcgttttcatagtataaatgaaaag |
125 |
Q |
| |
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| | |||| ||| |||||||||||| |
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| T |
20009291 |
gtgctttcgtagcataaatgaaaag |
20009267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 48300332 - 48300256
Alignment:
| Q |
135 |
gtggattagctaaactagaggaacaatccgtcttttattaagataaattgtaaaatcccttttgaatcattatgatg |
211 |
Q |
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| T |
48300332 |
gtggattagctaaaatataagaacaattaatttttcactaagataacttgtaaaatctcttttgaatcattatgatg |
48300256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 12573606 - 12573715
Alignment:
| Q |
1 |
catctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatg---atgttgatactcaactaaaaaatatggtattataaagttt |
97 |
Q |
| |
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||||||| ||||| |||||||||||||||| | ||||||||||||| | ||| || |||| ||| ||||||| |||||||||||||| | || ||| |
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| T |
12573606 |
catctggtctggctcagaatttggggacagtcatcaaggaatctgatgccgacattgttaatgtcgatgctcaacttaaaaatatggtattgt-aacttt |
12573704 |
T |
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| Q |
98 |
tatgcgttttc |
108 |
Q |
| |
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||||||||||| |
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|
| T |
12573705 |
tatgcgttttc |
12573715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 12573780 - 12573844
Alignment:
| Q |
146 |
aaactagaggaacaatccgtcttttattaagataaattgtaaaatcccttttgaatcattatgat |
210 |
Q |
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|||||||| ||| |||| || ||||| |||||||| | |||||||| |||||||||||||||||| |
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| T |
12573780 |
aaactagaagaataatcagttttttactaagataactagtaaaatctcttttgaatcattatgat |
12573844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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