View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_2D_high_30 (Length: 217)

Name: NF2853_2D_high_30
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_2D_high_30
NF2853_2D_high_30
[»] chr4 (3 HSPs)
chr4 (41-158)||(41451131-41451248)
chr4 (45-129)||(25754076-25754159)
chr4 (99-158)||(16596262-16596322)
[»] chr7 (1 HSPs)
chr7 (41-132)||(18104124-18104214)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 41451131 - 41451248
Alignment:
Q  41 aactaattaaaacaaccccaaagttcccttaaaaaataaagcaccccaaagtggctgatatatatattggattgaaaatagtagtgcaggca-aagcctc 139  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||  |||| |    
T  41451131 aactaattaaaactaccccaaagttcccttaaaa-ataaagcaccccaaagtggctggtatatatattggattgaaaataatagtgcaggcaggagcccc 41451229  T
Q  140 cacactgatgtgagtggct 158  Q
    |||||||||||||||||||    
T  41451230 cacactgatgtgagtggct 41451248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 25754076 - 25754159
Alignment:
Q  45 aattaaaacaaccccaaagttcccttaaaaaataaagcaccccaaagtggctgatatatatattggattgaaaatagtagtgcag 129  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  25754076 aattaaaactaccccaaagttcccttaaaa-ataaagcaccccaaagtggctggtatatatattggattgaaaatagtggtgcag 25754159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 16596322 - 16596262
Alignment:
Q  99 tatatatattggattgaaaatagtagtgcaggca-aagcctccacactgatgtgagtggct 158  Q
    |||||||||| |||| ||||||||||||||||||  |||| | ||| ||||||||||||||    
T  16596322 tatatatattagatttaaaatagtagtgcaggcagtagcccctacagtgatgtgagtggct 16596262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 18104124 - 18104214
Alignment:
Q  41 aactaattaaaacaaccccaaagttcccttaaaaaataaagcaccccaaagtggctgatatatatattggattgaaaatagtagtgcaggca 132  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18104124 aactaattaaaactaccccaaagttcccttaaaa-ataaagcaccccaaagtggctggtatatatattggattgaaaatagtagtgcaggca 18104214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University