View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_2D_low_12 (Length: 516)

Name: NF2853_2D_low_12
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_2D_low_12
NF2853_2D_low_12
[»] chr1 (7 HSPs)
chr1 (1-434)||(19235845-19236291)
chr1 (58-161)||(15947763-15947867)
chr1 (58-161)||(28292550-28292654)
chr1 (83-161)||(15183562-15183641)
chr1 (58-161)||(15939399-15939506)
chr1 (470-499)||(19235815-19235844)
chr1 (121-166)||(49703804-49703849)
[»] chr8 (3 HSPs)
chr8 (114-160)||(18142749-18142795)
chr8 (53-164)||(9555251-9555364)
chr8 (53-158)||(35171058-35171163)
[»] chr2 (5 HSPs)
chr2 (53-161)||(1130551-1130659)
chr2 (125-161)||(43080781-43080817)
chr2 (129-162)||(9158496-9158529)
chr2 (114-158)||(21436836-21436880)
chr2 (133-165)||(33013101-33013133)
[»] chr4 (2 HSPs)
chr4 (120-161)||(47312417-47312458)
chr4 (111-163)||(24194729-24194781)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 19236291 - 19235845
Alignment:
Q  1 tgaatttagacggaccaacttaacattaaaggtaaacacctttttagctgccgagtctgatgaaaataggatcacggtgctgatattttctgacttaagg 100  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  19236291 tgaatttagacggaccaacttaacattaaacgtaaacacctatttagctgccgagtctgatgaaaataggatcacggtgcagatattttcagacttaagg 19236192  T
Q  101 atcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatctaagttaaaggatcgtggtgatatttggcctatttacaatgttttcggggt 200  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  19236191 atcgatttgtaaccaaaagaatttaaaggactaacttgttataaacatctaacttaaaggatcgtggtgatatttggcctatttacaatgtttttggggt 19236092  T
Q  201 ttacacttatgcgtt-------------cagactagtaaattagtctttgatggtaacattcttttgaggagacgtaatgaatgtacatatacaatctta 287  Q
    ||||||||||| |||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19236091 ttacacttatgagtttatatgcacagttcagactagtaaattagtctttgatggtaacattcttttgaggagacgtaatgaatgtacatatacaatcgta 19235992  T
Q  288 ttgccaaaattacaatttgaagctaataagcattttaaccttctaaaaattaattaatgatgccatgcactgaaagccctgttaggatcaaaatactggt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19235991 ttgccaaaattacaatttgaagctaataagcattttaaccttctaaaaattaattaatgatgccatgcactgaaggccctgttaggatcaaaatactggt 19235892  T
Q  388 ttgtgtgttatggtaatttgagctttgtaatattccttaagcattta 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19235891 ttgtgtgttatggtaatttgagctttgtaatattccttaagcattta 19235845  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 15947763 - 15947867
Alignment:
Q  58 tgatgaaaataggatcacggtgctgatattttctgacttaa--ggatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatctaagtt 155  Q
    ||||||||||| ||| | ||||| |||||||| ||||||||  ||| | ||||| |||||||| |  |||||||||||||||||||||||||||||| ||    
T  15947763 tgatgaaaatatgataatggtgcagatattttatgacttaaaaggaccaatttgtaacaaaaa-agcttaaaggactaacttgttataaacatctaactt 15947861  T
Q  156 aaagga 161  Q
    ||||||    
T  15947862 aaagga 15947867  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 28292550 - 28292654
Alignment:
Q  58 tgatgaaaataggatcacggtgctgatattttctgacttaa--ggatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatctaagtt 155  Q
    ||||||||||| ||| | ||||| |||||||| ||||||||  ||| | ||||| |||||||| |  |||||||||||||||||||||||||||||| ||    
T  28292550 tgatgaaaatatgataatggtgcagatattttatgacttaaaaggaccaatttgtaacaaaaa-agcttaaaggactaacttgttataaacatctaactt 28292648  T
Q  156 aaagga 161  Q
    ||||||    
T  28292649 aaagga 28292654  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 15183641 - 15183562
Alignment:
Q  83 atattttctgacttaa--ggatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatctaagttaaagga 161  Q
    ||||||| ||||||||  ||| | ||||| |||||||| || |||||||||||||||||||||| ||| ||| ||||||||    
T  15183641 atattttatgacttaaaaggaccaatttgtaacaaaaa-aacttaaaggactaacttgttataatcatgtaacttaaagga 15183562  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 15939399 - 15939506
Alignment:
Q  58 tgatgaaaataggatcacggtgctgatattttctgacttaa--ggatcgatttgcaacaa--aaagaatttaaaggactaacttgttataaacatctaag 153  Q
    ||||||||||| ||| | ||||| |||||||| ||| ||||  ||| | ||||| |||||  ||| || |||||||||||| || ||||||||||||||     
T  15939399 tgatgaaaatatgataatggtgcagatattttatgatttaaaaggaccaatttgtaacaacaaaaaaacttaaaggactaatttattataaacatctaac 15939498  T
Q  154 ttaaagga 161  Q
    ||||||||    
T  15939499 ttaaagga 15939506  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 499
Target Start/End: Complemental strand, 19235844 - 19235815
Alignment:
Q  470 acattgcttgagaatctggctagagtagtt 499  Q
    ||||||||||||||||||||||||||||||    
T  19235844 acattgcttgagaatctggctagagtagtt 19235815  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 49703849 - 49703804
Alignment:
Q  121 atttaaaggactaacttgttataaacatctaagttaaaggatcgtg 166  Q
    |||||||  ||||| ||||||||||||||||| |||||||||||||    
T  49703849 atttaaataactaatttgttataaacatctaatttaaaggatcgtg 49703804  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 18142795 - 18142749
Alignment:
Q  114 aaaaagaatttaaaggactaacttgttataaacatctaagttaaagg 160  Q
    ||||| || |||||||||||||||||||||||||||||| |||||||    
T  18142795 aaaaaaaaattaaaggactaacttgttataaacatctaacttaaagg 18142749  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 9555251 - 9555364
Alignment:
Q  53 gagtctgatgaaaataggatcacggtgctgatattttctgacttaa--ggatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatct 150  Q
    |||| |||||||| ||||||   |||||  ||||||| ||||||||  ||||| ||||| ||| |||| || ||||| || ||||||||||||| ||| |    
T  9555251 gagtttgatgaaattaggatactggtgcaaatattttatgacttaaaaggatcaatttgtaactaaaaaaacttaaaagagtaacttgttataatcatgt 9555350  T
Q  151 aagttaaaggatcg 164  Q
    || |||||||||||    
T  9555351 aacttaaaggatcg 9555364  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 35171058 - 35171163
Alignment:
Q  53 gagtctgatgaaaataggatcacggtgctgatattttctgacttaag-gatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatcta 151  Q
    |||| |||||||| |||||| | |||||  ||||||| ||||||||  || | ||||| |||||||| || |||||| ||||||||||||||| ||||||    
T  35171058 gagtttgatgaaattaggataatggtgcatatattttatgacttaaatgaccaatttgtaacaaaaaaaacttaaag-actaacttgttataatcatcta 35171156  T
Q  152 agttaaa 158  Q
    | |||||    
T  35171157 acttaaa 35171163  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 1130659 - 1130551
Alignment:
Q  53 gagtctgatgaaaataggatcacggtgctgatattttctgacttaag-gatcgatttgcaacaaaaagaatttaaaggactaacttgttataaacatcta 151  Q
    |||| |||| |||||||||| | | ||| |||||||| ||||||||  || | ||||| |||||||| || ||||||||||||||||||||||||| | |    
T  1130659 gagtttgattaaaataggataatgatgcagatattttatgacttaaaagaccaatttgtaacaaaaa-aacttaaaggactaacttgttataaacagcaa 1130561  T
Q  152 agttaaagga 161  Q
    | ||||||||    
T  1130560 acttaaagga 1130551  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 43080817 - 43080781
Alignment:
Q  125 aaaggactaacttgttataaacatctaagttaaagga 161  Q
    |||||||||||||||||||| ||||||||||||||||    
T  43080817 aaaggactaacttgttataatcatctaagttaaagga 43080781  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 9158529 - 9158496
Alignment:
Q  129 gactaacttgttataaacatctaagttaaaggat 162  Q
    |||||||||||||||||||||||| |||||||||    
T  9158529 gactaacttgttataaacatctaacttaaaggat 9158496  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 21436880 - 21436836
Alignment:
Q  114 aaaaagaatttaaaggactaacttgttataaacatctaagttaaa 158  Q
    ||||| || |||||||||||||||||||||| ||||||| |||||    
T  21436880 aaaaaaaacttaaaggactaacttgttataatcatctaacttaaa 21436836  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 33013101 - 33013133
Alignment:
Q  133 aacttgttataaacatctaagttaaaggatcgt 165  Q
    |||||||||||||||||||| ||||||||||||    
T  33013101 aacttgttataaacatctaacttaaaggatcgt 33013133  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 47312417 - 47312458
Alignment:
Q  120 aatttaaaggactaacttgttataaacatctaagttaaagga 161  Q
    |||||||||||||||||| |||||||||| ||| ||||||||    
T  47312417 aatttaaaggactaacttattataaacatgtaatttaaagga 47312458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 24194781 - 24194729
Alignment:
Q  111 aacaaaaagaatttaaaggactaacttgttataaacatctaagttaaaggatc 163  Q
    |||||||| || ||| | |||||||||||||||||||| ||| ||||||||||    
T  24194781 aacaaaaaaaacttacaagactaacttgttataaacatataacttaaaggatc 24194729  T

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