View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_16 (Length: 442)
Name: NF2853_2D_low_16
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 49602772 - 49602416
Alignment:
| Q |
1 |
tgagaggttgatggcacaattttctcaggattatgaatcaactaggggacgtagtagtgatattaagatgttgatttctactcagaggtctggtactgct |
100 |
Q |
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| T |
49602772 |
tgagaggttgatggcacaattttctcaggattatgaatcaactaggggacgtagtagtgatattaagatgttgatttctactcagaggtctggtactgct |
49602673 |
T |
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| Q |
101 |
gctgataaagtttctgctttttctgtcttggttggtgataatcctgttacaaatttgaggtctcttgatgcacttttaggtaaattcaattctttgtttt |
200 |
Q |
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| T |
49602672 |
gctgataaagtttctgctttttctgtcttggttggtgataatcctgttgcaaatttgaggtctcttgatgcacttttaggtaaattcaattctttgtttt |
49602573 |
T |
|
| Q |
201 |
ttattgattttgttgttatttatcttgttatgcatgcttagtttgagttgtcatgcatgtatagaaatttaaagtttagtatgcattgaaggattagcat |
300 |
Q |
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| T |
49602572 |
tcattgattttgttgttatttatcttgttatgcatgcttagtttgagttgtcatgcatgtatagaaatttaaagtttagtatgcattgaaggattagcat |
49602473 |
T |
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| Q |
301 |
tgcaagatgggtgatactgctaagagaacatgtggatatatcaagttttgattactt |
357 |
Q |
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| T |
49602472 |
tgcaagatgggtgatactgctaagagaacatgtggatatatcaagttttgattactt |
49602416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 413
Target Start/End: Complemental strand, 49602420 - 49602383
Alignment:
| Q |
376 |
tacttaattatttgctcaagacgttgtattgttttgct |
413 |
Q |
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| T |
49602420 |
tacttaattatttgctcaagacgttgtattgttctgct |
49602383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 7226423 - 7226611
Alignment:
| Q |
1 |
tgagaggttgatggcacaattttctcaggattatgaatcaactaggggacgtagtagtgatattaagatgttgatttctactcagaggtctggtactgct |
100 |
Q |
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|||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7226423 |
tgagagattgatggcacaatttgctcaggattatgaatcgactaggggacgtagtagtgatattaagatgttgatttctactcagaggtctggtactgct |
7226522 |
T |
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| Q |
101 |
gctgataaagtttctgctttttctgtcttggttggtgataatcctgttacaaatttgaggtctcttgatgcacttttaggtaaattcaa |
189 |
Q |
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| T |
7226523 |
gctgataaagtttctgccttttctgtcttggttggtgataatcctgttgcaaatttgaggtctcttgatgctcttttaggtaaattcaa |
7226611 |
T |
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