View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_2D_low_19 (Length: 417)
Name: NF2853_2D_low_19
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 14162643 - 14163025
Alignment:
| Q |
17 |
gaacacaatacaagaaaatgttgctaaaagtttcaagatgaaaactcaatccatcattcaagagtactttttatcaggtgatatatttgaagtgattagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14162643 |
gaacacaatacaagaaaatgttgctaaaagtttcaagatgaaaactcaatccatcattcaagagtactttttatcaggtgatatatttgaagtgattagt |
14162742 |
T |
|
| Q |
117 |
tgtttagaacaagagaacaacaaaaactgtggtgaactaaatgcaatcttcgtgaaaaagctaataacattagcaatggatagaaagaatagagagaaag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14162743 |
tgtttagaacaagagaacaacaaaaactgtggtgaactaaatgcaatcttcgtcaaaaagctaataacattagcaatggatagaaagaatagagagaaag |
14162842 |
T |
|
| Q |
217 |
aaatggcttcggtgttactttcatcgctttgttttccacctgacgatgttgtcaatggttttgtgatgctaattgaatcagcagatgatactgctttaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14162843 |
aaatggcttcggtgttactttcatcgctttgttttccacctgacgatgttgtcaatggttttgtgatgctaattgaatcagcagatgatactgctttaga |
14162942 |
T |
|
| Q |
317 |
caatcctgtagttgttgaagatcttgctatgtttctagcaagatcggttgttgacgaagttttagcaccgcaacagcttgaag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14162943 |
caatcctgtagttgttgaagatcttgctatgtttctagcaagatcggttgttgacgaagttttagcaccgcaacagcttgaag |
14163025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University