View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_2D_low_20 (Length: 417)
Name: NF2853_2D_low_20
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 398
Target Start/End: Complemental strand, 53603867 - 53603469
Alignment:
| Q |
12 |
gagatgaacttgtaaattgtaattagcaatagagtagcaaaagacatacccatgaggaccatgctatgctgtaaatgaacatctgcattcaatttgatag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53603867 |
gagatgaacttgtaaattgtaattagcaatagagtagcaaaagacatacccatgaggaccatgctatgctgtaaatgaacatctgcattcaatttgatag |
53603768 |
T |
|
| Q |
112 |
cactaatttagaatttacaaaaatgtgtannnnnnnnnn-acttataaaattacaaagggataaatgcttacatgtacacagtgaaaaaagagtccaatc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53603767 |
cactaatttagaatttacaaaaatgtgtatttttttttttacttataaaattacaaaaggataaatgcttacatgtacacagtgaaaaaagagtccaatc |
53603668 |
T |
|
| Q |
211 |
gatagaagccttgcctcgcccaaagtaggagcaaaaataggcataagaaaaagctgtgatcaacaatgtttgataattaata-tttacaataaactcaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
53603667 |
gatagaagccttgcctcgcccaaagtaggagcaaaaataggcataagaaaaagctgtgatcaacaatgtttgat-attaatattttacaataaactcaaa |
53603569 |
T |
|
| Q |
310 |
caaattgtagatttgacaagaca-----------aaacataggtgatatttgacaactaaaatcacttcttacaaaaattacctgtgacacagtccctgc |
398 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53603568 |
caaattgtagatttgacaagacaaaacgtaaactaaacataggtgatatttgacaactaaaatcacgtcttacaaaaattacctgtgacacagtccctgc |
53603469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 39170530 - 39170622
Alignment:
| Q |
35 |
tagcaatagagtagcaaaagacatacccatgaggaccatgctatgctgtaaatgaacatctgcattcaatttgatagcactaatttagaattt |
127 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
39170530 |
tagcaatagagtagctaaagacatacccaagaggaccatgctatactgtaaatgaacatctacattcaatttgataacactaatttataattt |
39170622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University