View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_22 (Length: 363)
Name: NF2853_2D_low_22
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_22 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 23239480 - 23239116
Alignment:
| Q |
1 |
gaaaaatactttat--tctctatatgcaatgccactatggatttatgaggatgagcaagtgctaatggattatatctatcgcggcgggaaataaatttga |
98 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
23239480 |
gaaaaatactttatattctctatatgcaatgccactatggatttatgaggatggccaagtgcgaatggattatagctatcgcggcgggaaataaatttga |
23239381 |
T |
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| Q |
99 |
tcatttatgatttcaaaaaaggtacttttaaggaaaccttgatgcatgaagtctatggttcaataacatctgaggtttgtgttgagagtttgatatcacc |
198 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
23239380 |
tcatttatgattttaaaaaaggtacttttaaggaaaccttgatgcatgaagtctatgattcaataacctctaaggtttgtgttgagagtttgatatcacc |
23239281 |
T |
|
| Q |
199 |
ttgtttctaagatgagtatgtcaatgtggtaccaggttctttgaaatttagactcaattgattggaacttatatgttaatttctgtttgttatttatttt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23239280 |
ttgtttctaagatgagtatgtcaatgtggtaccaggtgctttgaaatttagactcaattgattggaacttatatgttaatttctgtctgttatttatttt |
23239181 |
T |
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| Q |
299 |
atacttgttctaattactattgaatttatttatcattgttctatcgaatatgtagcttgagaaat |
363 |
Q |
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| T |
23239180 |
atacttgttctaattactattgaatttatttatcattgttctatcgaatatgtagcttgagaaat |
23239116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 110 - 338
Target Start/End: Complemental strand, 23234738 - 23234512
Alignment:
| Q |
110 |
ttcaaaaaaggtacttttaaggaaaccttgatgcatgaagtctatggttcaataacatctgaggtttgtgttgagagtttgatatcaccttgtttctaag |
209 |
Q |
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|||||||| |||||||||||| || ||||||| || || || |||||| || || | ||| |||||| |||||||| |||||||||| ||||||||| |
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| T |
23234738 |
ttcaaaaatggtacttttaagaaacccttgatacaagacttcattggttcgattacctttgaagtttgtattgagagtctgatatcaccgtgtttctaat |
23234639 |
T |
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| Q |
210 |
atgagtatgtcaatgtggtaccaggttctttgaaatttagactcaattgattggaacttatatgttaatttctgttt--gttatttattttatacttgtt |
307 |
Q |
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||||| || |||||||||| || | || |||||||||||||||||| |||||||||||||||||| |||| |||||||||||| || ||||| |
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| T |
23234638 |
atgaggatttcaatgtggtgttagttggctttaaatttagactcaattga----aacttatatgttaatttccgtttatgttatttattttttatttgtt |
23234543 |
T |
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| Q |
308 |
ctaattactattgaatttatttatcattgtt |
338 |
Q |
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| T |
23234542 |
ctaattactattgactctatttatcattgtt |
23234512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 23230864 - 23230738
Alignment:
| Q |
102 |
tttatgatttcaaaaaaggtacttttaaggaaaccttgatgcatgaagtctatggttcaataacatctgaggtttgtgttgagagtttgatatcaccttg |
201 |
Q |
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||||||| |||||||| |||||||||||| || |||||||||| || || ||||||| || || | ||| |||||| ||||||| ||||||||||||| |
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| T |
23230864 |
tttatgacttcaaaaatggtacttttaagaaacccttgatgcaagacttcaatggttcgatgacctatgaagtttgtagtgagagtctgatatcaccttg |
23230765 |
T |
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| Q |
202 |
tttctaagatgagtatgtcaatgtggt |
228 |
Q |
| |
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||||||| ||||| || |||||||||| |
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| T |
23230764 |
tttctaatatgaggatttcaatgtggt |
23230738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 338
Target Start/End: Original strand, 23197110 - 23197412
Alignment:
| Q |
29 |
gccactatggatttatgaggatgagcaagtgctaatggattatatctatcgcggcggga-aataaatttgatcatttatgatttcaaaaaaggtactttt |
127 |
Q |
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|||||||||||||| ||||||||| ||||||||||| ||||||| ||| || || |||||||||| | |||||||||||||||| ||||||||| |
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| T |
23197110 |
gccactatggatttctgaggatgaccaagtgctaatcgattatac--atcatt-cgagagaataaatttggccgtttatgatttcaaaaacggtactttt |
23197206 |
T |
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| Q |
128 |
aaggaaaccttgatgcatgaagtctatggttcaataacatctgaggtttgtgttgagagtttgatatcaccttgtttctaagatgagtatgtcaatgtgg |
227 |
Q |
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|| || ||||||||| || || | ||| || || ||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||| |
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| T |
23197207 |
aaaaaactcttgatgcaagacatcaagtgttggattacctctgaagtttgtgttgagagtttgatatcaccttgtttctaatgtga---taccaatgtgg |
23197303 |
T |
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| Q |
228 |
taccaggttctttgaaatttagactcaattgattggaacttatatgttaatttctgtt--tgttatttattttatacttgttctaattactattgaattt |
325 |
Q |
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| | | | || | |||||||||||||| |||||||||| ||||||| || ||||||||||||||||||| |||||||||| | ||| ||| |
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| T |
23197304 |
tgctatatcgcctgtactttagactcaattgc----aacttatatgctaatttcctttgatgttatttattttatacttattctaattacgagtgacttt |
23197399 |
T |
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| Q |
326 |
atttatcattgtt |
338 |
Q |
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||||||||||||| |
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| T |
23197400 |
atttatcattgtt |
23197412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 23226323 - 23226266
Alignment:
| Q |
15 |
tctctatatgcaatgccactatggatttatgaggatgagcaagtgctaatggattata |
72 |
Q |
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|||| |||||| | |||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
23226323 |
tctccatatgccaagccactatggatttatgaggatgaccaagtgctaatagattata |
23226266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 23226078 - 23226033
Alignment:
| Q |
293 |
tattttatacttgttctaattactattgaatttatttatcattgtt |
338 |
Q |
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|||||||||||||||||| |||||||||| ||||||||| |||||| |
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| T |
23226078 |
tattttatacttgttctagttactattgactttatttattattgtt |
23226033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 20019589 - 20019561
Alignment:
| Q |
176 |
tgtgttgagagtttgatatcaccttgttt |
204 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
20019589 |
tgtgttgagagtttgatatcaccttgttt |
20019561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 27471302 - 27471258
Alignment:
| Q |
270 |
tatgttaatttctgtttgttatttattttatacttgttctaatta |
314 |
Q |
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||||||||||||||||| | ||||||||||| |||||||||||| |
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| T |
27471302 |
tatgttaatttctgtttataatttattttatgattgttctaatta |
27471258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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