View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_31 (Length: 327)
Name: NF2853_2D_low_31
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 6491282 - 6490974
Alignment:
| Q |
1 |
ataaacaactggaatgtttggaaaaacccaacatactttcatcactcgaccacattacataaacaagttcggcttcttggccttgtatgttgtcttcagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6491282 |
ataaacaactggaatgtttggaaaaacccaacatactttcatcactcgaccacattacataaacaagttcggcttcttggccttgtatgttgtcttcagc |
6491183 |
T |
|
| Q |
101 |
ttcttggatggtggtgtgattttcttgaaaaccaatgggagcttgatctttggaatcgtggaattgtttggtgctctccctcttgcaaagcttggctggg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6491182 |
ttcttgggtggtggtgtgattttcttgaaaaccaatgggaacttgatctttggaatcgtggaattgtttggtgctctccctcttgcaaagcttggctggg |
6491083 |
T |
|
| Q |
201 |
atggtggcagtcttaataatctgaatgcaggggaaacagaccctatgtcgtgaagccgtctcattgtacatcagatcaactgcgccatttagagtggtgt |
300 |
Q |
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| T |
6491082 |
atggtggcagtcttaataatctgaatgcaggggaaacaaaccctatgtcgtgaagccgtctcattgtacatcagatcaactgcgccatttagagtggtgt |
6490983 |
T |
|
| Q |
301 |
cacggaact |
309 |
Q |
| |
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||||||||| |
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| T |
6490982 |
cacggaact |
6490974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 247
Target Start/End: Complemental strand, 41869970 - 41869846
Alignment:
| Q |
122 |
ttcttgaaaaccaatgggagcttgatctttggaatcgtggaattgtttggtgctctccctcttgcaaagcttggctgggatggtggcagtcttaataatc |
221 |
Q |
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| T |
41869970 |
ttcttgtacaccaaggggaacttgat-tttggaattgtggaactgcttagtgctctcccttttgcacagattagctgggatggtggccgtcttaatgatc |
41869872 |
T |
|
| Q |
222 |
tgaatgcaggggaaacagaccctatg |
247 |
Q |
| |
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| T |
41869871 |
tggatgcaaggaaatctgaccctatg |
41869846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 15297822 - 15297648
Alignment:
| Q |
54 |
attacataaacaagttcggcttcttggccttgtatgttgtcttcagcttcttggatggtggtgtgattttcttgaaaaccaatgggagcttgatctttgg |
153 |
Q |
| |
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|||||||||||| ||| || || | ||||||||||||||||| |||||| ||| ||| || | || |||||||| ||||| |||| |||||| ||| | |
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| T |
15297822 |
attacataaacatgttgggttttgttgccttgtatgttgtcttgagcttcctggttgggggcctaatcttcttgaacaccaacgggaacttgat-tttag |
15297724 |
T |
|
| Q |
154 |
aatcgtggaattgtttggtgctctccctcttgcaaagcttggctgggatggtggcagtcttaataatctgaatgca |
229 |
Q |
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| | ||| || ||||| ||||||||||| |||||||| || |||||||| ||||||||||| || ||||| ||||| |
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| T |
15297723 |
agttgtgaaactgtttcgtgctctcccttttgcaaaggttagctgggattgtggcagtcttgatgatctggatgca |
15297648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 271
Target Start/End: Complemental strand, 39709719 - 39709506
Alignment:
| Q |
57 |
acataaacaagttcggcttcttggccttgtatgttgtcttcagcttcttggatggtggtgtgattttcttgaaaaccaatgggagcttgatctttggaat |
156 |
Q |
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||||||||| ||| ||||||||||| ||||| ||||| || || || | | |||||| | || |||||| | |||| |||| |||||| |||||||| |
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| T |
39709719 |
acataaacaggttgggcttcttggctttgtaggttgtttttaggctcctagttggtggcctaatcttcttgtacaccagagggaacttgat-tttggaat |
39709621 |
T |
|
| Q |
157 |
cgtggaattgtttggtgctctccctcttgcaaagcttggctgggatggtggcagtcttaataatctgaatgcaggggaaacagaccctatgtcgtgaagc |
256 |
Q |
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||| || || || ||||||||||| ||||| || || || |||||||||||||||||||| || ||||||||||| || | ||||||||| || || || |
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| T |
39709620 |
tgtgaaactgcttagtgctctcccttttgcacagattagccgggatggtggcagtcttaatgatttgaatgcagggaaacctgaccctatgacgagatgc |
39709521 |
T |
|
| Q |
257 |
cgtctcattgtacat |
271 |
Q |
| |
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| |||| |||||||| |
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| T |
39709520 |
catctcgttgtacat |
39709506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 39718370 - 39718196
Alignment:
| Q |
54 |
attacataaacaagttcggcttcttggccttgtatgttgtcttcagcttcttggatggtggtgtgattttcttgaaaaccaatgggagcttgatctttgg |
153 |
Q |
| |
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|||||||||||| ||| |||||||| || ||||| ||||| || || || ||| |||||| | || |||||| | |||| |||| |||||| ||||| |
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| T |
39718370 |
attacataaacaggttgggcttcttagctttgtaggttgttttgaggctcctggttggtggcctaatcttcttgtacaccagagggaacttgat-tttgg |
39718272 |
T |
|
| Q |
154 |
aatcgtggaattgtttggtgctctccctcttgcaaagcttggctgggatggtggcagtcttaataatctgaatgca |
229 |
Q |
| |
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||| ||| || || || |||||||| || ||||| || || ||||||||||||||||||||||| || |||||||| |
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| T |
39718271 |
aattgtgaaactgcttagtgctctctcttttgcacagattagctgggatggtggcagtcttaatgatttgaatgca |
39718196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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