View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_36 (Length: 306)
Name: NF2853_2D_low_36
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 386606 - 386320
Alignment:
| Q |
1 |
taaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttctttttaatttgaatcttt |
100 |
Q |
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| T |
386606 |
taaaaaagccttgtgaggattttcctcaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttctttttaatttgaatcttt |
386507 |
T |
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| Q |
101 |
gacacttttggacagataattgttgttgttgaatcttcttgagaaatcttcaaggtggaactttttccaagttttgattatttgaatacttcgagcgagg |
200 |
Q |
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| T |
386506 |
gacacttttggacagataattattgttgttgaatcttcttgagaaatcttcaa-gtggaactttttacaagttttgattatttgaatacttcgagcgagg |
386408 |
T |
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| Q |
201 |
atagtagttaccttagatgataatttgtggcttctttgatacattttgactttcaacgagataatgctctaactagaaatgttgaaag |
288 |
Q |
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| T |
386407 |
atagtagtaaccttagatgataatttgtggcttctttgatacattttgactttcaacgagataatgctctaactagaaatgttgaaag |
386320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 36926512 - 36926447
Alignment:
| Q |
4 |
aaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtcg |
69 |
Q |
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|||||| |||| ||||||||||| |||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
36926512 |
aaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcg |
36926447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 49608292 - 49608358
Alignment:
| Q |
2 |
aaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtc |
68 |
Q |
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||||||| ||||| ||||||||||||||||| |||||||||||||| | | ||||||||||||||| |
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| T |
49608292 |
aaaaaaggcttgtcaggattttccacaagttgattgtattcttgagtccttttttcaggcatgagtc |
49608358 |
T |
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