View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_4 (Length: 640)
Name: NF2853_2D_low_4
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 338 - 619
Target Start/End: Original strand, 41189392 - 41189672
Alignment:
| Q |
338 |
aaaaggggttagaacaaatgtaaagttgagtnnnnnnnngaacatatgtaaagttaaaaaagccttacaagtaaggaaatgtgtgtaatacacagatgag |
437 |
Q |
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| T |
41189392 |
aaaagaggttagaacaaatgtaaagttgagtaaaaaaaagaacatatgtaaagttaaaaaagccttacaagtaaggaaatgtgtgtaatacacagatgag |
41189491 |
T |
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| Q |
438 |
aaacctttgttttgtcggaatattttgggaaatatcaagtgcgcccacttgtccaaaacaagttgtatcgataccttttttatccctatcacatgatgcc |
537 |
Q |
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| T |
41189492 |
aaacctttgttttgtcggaatattttgggaaatatcaagtgcgcccacttgtccaaaacaagttgtatcgatacc-tttttatccctatcacatgatgcc |
41189590 |
T |
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| Q |
538 |
aagggatatagcgtacgttgtctcatactcaatttttgtgttctttacttacattttgtaaagctagtaagaatgcgggtcc |
619 |
Q |
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| T |
41189591 |
aagggatatagcgtacgttgtctcatactcaatttttgtgttctttacttacattttgtaaagctagtaagaatgtgggtcc |
41189672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 41189029 - 41189248
Alignment:
| Q |
1 |
gctgtgtgtctaccttggtccaaggtctgtgtattacttggctcaatgtgacaatgtcaatggtgaatagaccacttcccaagagttttcaaaacattgg |
100 |
Q |
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| T |
41189029 |
gctgtgtgtctaccttggtccaaggtccgtgtattacttggctcaatgtgacaatgtcaatggtgaatagaccacttcccaagagttttcaaaacattgg |
41189128 |
T |
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| Q |
101 |
ttttgcttttcacgatccatatacatttgaattggtgtggcttggcttagaattagatctcttatgtcatgggatctttcaaaacatacgcaacatcttg |
200 |
Q |
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| T |
41189129 |
ttttgcttttcacgatccatatacatttgaattggtgtggcttggcttagaattatatctcttatgtcatgggatctttcaaaacatacgcaacatcttg |
41189228 |
T |
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| Q |
201 |
atggtttagttttatgtgac |
220 |
Q |
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| T |
41189229 |
atggtttagttttatgtgac |
41189248 |
T |
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