View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_40 (Length: 304)
Name: NF2853_2D_low_40
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 26315402 - 26315674
Alignment:
| Q |
1 |
aaaataaatggagtttatagataccctaaagcattggctgctttgatagcatggataattctagggtgtataggaatcctcttcaaaacttgcacaatgt |
100 |
Q |
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| T |
26315402 |
aaaataaatggagtttatagataccctaaagcattggctgctttgatagcatggatagttctagggtgtataggaatcatcttcaaaacttgcacaatgt |
26315501 |
T |
|
| Q |
101 |
cttctattgtttttccattagaatgaagctccatcatcatcctatcctataaagnnnnnnnnnnnnnnnnnnngagggttagataatatttatgtcatat |
200 |
Q |
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| T |
26315502 |
cttctattgtttttccattagaatgaagctccatcatcatcctatcctataaagcaaaaacaacaaaacaaaagagggttagttaatatttatgtcatat |
26315601 |
T |
|
| Q |
201 |
aaacacaatgtag-----attatattatattatattagaatagattagagggggcaaagagatatatcatttg |
268 |
Q |
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| T |
26315602 |
aaacacaatgtagattatattatattatattatattagaatagattagagggggcaaaaagatatatcatttg |
26315674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 43110533 - 43110670
Alignment:
| Q |
16 |
tatagataccctaaagcattggctgctttgatagcatggataattctagggtgtataggaatcctcttcaaaacttgcacaatgtcttctattgtttttc |
115 |
Q |
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|||| ||||||||||| || ||||||||| || | | |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
43110533 |
tatacataccctaaagtataggctgctttaatggaagggattattctagggtgtataggaatcctcttcaaaacttgcacaatgtcttcaatggtttttc |
43110632 |
T |
|
| Q |
116 |
cattagaatgaagctccatcatcatcctatcctataaa |
153 |
Q |
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| T |
43110633 |
cattagaattaagctccatcatcatcctatcctataaa |
43110670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 5249978 - 5249925
Alignment:
| Q |
95 |
caatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcct |
148 |
Q |
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|||| ||||| || ||||| ||||| ||||||| |||||||||||||||||||| |
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| T |
5249978 |
caatctcttcaatggttttaccatttgaatgaatctccatcatcatcctatcct |
5249925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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