View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_41 (Length: 304)
Name: NF2853_2D_low_41
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 26506835 - 26506566
Alignment:
| Q |
19 |
ccacccaatctctgccaccataaaattaactgttccatttttaggcaccaagtaaccattaaaaatcacatcctcagtcactgcatgtggaattaagtag |
118 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26506835 |
ccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggtcactgcatgtggaattaagtag |
26506736 |
T |
|
| Q |
119 |
tgagaaggagggtggcgccttaacccttctaaaatcactgccttaagataaggtaacttttccaaatcttcctcttttacttctctttcctctctatcac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26506735 |
tgagaaggagggtggcgccttaacccttctaaaatcactgccttaagataaggtaacttttccaaatcttcctcttttacttctctttcctctctatcac |
26506636 |
T |
|
| Q |
219 |
caattacaactccaatttcctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26506635 |
caattacaactccaatttcctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataac |
26506566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 29 - 288
Target Start/End: Complemental strand, 26494780 - 26494521
Alignment:
| Q |
29 |
tctgccaccataaaattaactgttccatttttaggcaccaagtaaccattaaaaatcacatcctcagtcactgcatgtggaattaagtagtgagaaggag |
128 |
Q |
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||||||||||||||||| || || |||||||||||||||||||||||||| |||| | |||||| |||||| || |||||||| |||||||| ||||| |
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| T |
26494780 |
tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagtaggag |
26494681 |
T |
|
| Q |
129 |
ggtggcgccttaacccttctaaaatcactgccttaagataaggtaacttttccaaatcttcctcttttacttctctttcctctctatcaccaattacaac |
228 |
Q |
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| T |
26494680 |
gatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctccaaatcttcctctctcacttccctttcctctctttcaccaaccacctc |
26494581 |
T |
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| Q |
229 |
tccaatttcctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataac |
288 |
Q |
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| T |
26494580 |
ttcaatttcctccactagcatctgttgcacgtgtttgtctttcaccaaattcgccataac |
26494521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 2351220 - 2351131
Alignment:
| Q |
19 |
ccacccaatctctgccaccataaaattaactgttccatttttaggcaccaagtaaccattaaaaatcacatcctcagtcactgcatgtgg |
108 |
Q |
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|||||| |||||||||||||||||||| || || ||||||||||||||||| ||||| ||||||| ||||||||| ||||| || ||||| |
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| T |
2351220 |
ccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtgg |
2351131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 2327197 - 2327113
Alignment:
| Q |
21 |
acccaatctctgccaccataaaattaactgttccatttttaggcaccaagtaaccattaaaaatcacatcctcagtcactgcatg |
105 |
Q |
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|||| |||||||||||||| ||||| || || ||||||||||||||||| |||||||| |||| |||||| || |||||||||| |
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| T |
2327197 |
accccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcactgcatg |
2327113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 2330912 - 2330831
Alignment:
| Q |
21 |
acccaatctctgccaccataaaattaactgttccatttttaggcaccaagtaaccattaaaaatcacatcctcagtcactgc |
102 |
Q |
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|||| |||||||| ||||||||||| || || |||| |||||||||||| |||||||| |||| ||||||||| ||||||| |
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| T |
2330912 |
accccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgc |
2330831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 2303644 - 2303570
Alignment:
| Q |
19 |
ccacccaatctctgccaccataaaattaactgttccatttttaggcaccaagtaaccattaaaaatcacatcctc |
93 |
Q |
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|||||| ||||| |||| ||| ||||| || || ||||||||||||||||| ||||| || |||| ||||||||| |
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| T |
2303644 |
ccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctc |
2303570 |
T |
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