View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_2D_low_51 (Length: 291)

Name: NF2853_2D_low_51
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_2D_low_51
NF2853_2D_low_51
[»] chr1 (6 HSPs)
chr1 (86-291)||(34989638-34989843)
chr1 (86-288)||(2305325-2305527)
chr1 (45-87)||(34975617-34975659)
chr1 (45-87)||(34989452-34989494)
chr1 (19-51)||(34989910-34989942)
chr1 (48-87)||(34980400-34980439)
[»] scaffold1439 (1 HSPs)
scaffold1439 (107-290)||(1454-1637)
[»] chr3 (21 HSPs)
chr3 (86-290)||(22656906-22657110)
chr3 (86-288)||(22620754-22620956)
chr3 (92-288)||(22648030-22648226)
chr3 (86-286)||(22034943-22035143)
chr3 (86-286)||(22615111-22615308)
chr3 (86-286)||(22115511-22115711)
chr3 (86-276)||(22187424-22187614)
chr3 (86-286)||(21930847-21931047)
chr3 (107-286)||(30989166-30989345)
chr3 (107-286)||(22357866-22358042)
chr3 (86-276)||(22028436-22028626)
chr3 (86-286)||(21937579-21937779)
chr3 (86-283)||(22436477-22436671)
chr3 (86-215)||(22105205-22105334)
chr3 (86-219)||(22179910-22180043)
chr3 (206-286)||(22431133-22431213)
chr3 (48-92)||(22657250-22657294)
chr3 (141-244)||(21946092-21946195)
chr3 (203-286)||(22367884-22367967)
chr3 (83-123)||(3220945-3220985)
chr3 (205-249)||(18966946-18966990)
[»] chr5 (2 HSPs)
chr5 (188-290)||(40580410-40580512)
chr5 (86-132)||(40580513-40580559)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 86 - 291
Target Start/End: Complemental strand, 34989843 - 34989638
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34989843 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcacttcctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 34989744  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttaca 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34989743 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaatggttgtagttcatgcacttcaataaatgaagatttcttaca 34989644  T
Q  286 atacat 291  Q
    ||||||    
T  34989643 atacat 34989638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 86 - 288
Target Start/End: Original strand, 2305325 - 2305527
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  2305325 gataaaagaccaccaatagttacaattgctaggggtaagcccttgcacttcctagcgatttcaaaagatatatcaatgagctcttttggacaacatcctt 2305424  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttaca 285  Q
    | |||||||||||||||||||||||||| |||||||||| | ||| ||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  2305425 caaagtcaaattgaaatgccttcttattaaacaaatcaaattatttttcctcagttaaaagttgtagttcatgcacttgaataaaagaagatttcttaca 2305524  T
Q  286 ata 288  Q
    |||    
T  2305525 ata 2305527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 34975617 - 34975659
Alignment:
Q  45 ggaatcactgaaatggatcgaggtgcattgatttctgagttga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34975617 ggaatcactgaaatggatcgaggtgcattgatttctgagttga 34975659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 34989452 - 34989494
Alignment:
Q  45 ggaatcactgaaatggatcgaggtgcattgatttctgagttga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34989452 ggaatcactgaaatggatcgaggtgcattgatttctgagttga 34989494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 34989942 - 34989910
Alignment:
Q  19 aaaatcttttttattctggtcaaatgggaatca 51  Q
    |||||||||||||||||||||||||||||||||    
T  34989942 aaaatcttttttattctggtcaaatgggaatca 34989910  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 34980400 - 34980439
Alignment:
Q  48 atcactgaaatggatcgaggtgcattgatttctgagttga 87  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  34980400 atcactgaaatggatcgagatgcattgatttatgagttga 34980439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1439 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 107 - 290
Target Start/End: Original strand, 1454 - 1637
Alignment:
Q  107 acaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgcct 206  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1454 acaattgctaggggtaagcccttgcacttcctagcgatttcaaaagatatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgcct 1553  T
Q  207 tcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaataca 290  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1554 tcttattaaacaaatcaaatgatttttcttcagttaaaggttgtagttcatgcacttcaataaaagaagatttcttacaataca 1637  T

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Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 22656906 - 22657110
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||| || ||||||| ||||||||| || ||||| || ||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||| |    
T  22656906 gataaaaggccgccaatagccacaattgccagcggtaaacctttgcattttctagcaatttcggaagatatatcaatgagctcttttggacaacatccat 22657005  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttaca 285  Q
      |||||||||||||| ||||||||||| ||||| ||||  ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  22657006 taaagtcaaattgaaaggccttcttattaaacaactcaaaagattgttctactgttaaaggatgtagttcatgcacttcaataaaagaagatttcttaca 22657105  T
Q  286 ataca 290  Q
    |||||    
T  22657106 ataca 22657110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 86 - 288
Target Start/End: Original strand, 22620754 - 22620956
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    ||||||||||||||||  |  ||||||||||||||||| |||||||| ||||||||||||||  ||| ||||||||| || ||||||||||||| ||| |    
T  22620754 gataaaagaccaccaacggctacaattgctagtggtaaacccttgcattttctagcaatttcggaagatatatcaattagatcttttggacaacttccat 22620853  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttaca 285  Q
    | ||||||||| ||||| |||||||||||||||| ||||  |||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||    
T  22620854 caaagtcaaatcgaaataccttcttattgaacaactcaaaagattgttcctcagttaaaggttgtagttcatgcacctcaataaaagaagattttttaca 22620953  T
Q  286 ata 288  Q
    |||    
T  22620954 ata 22620956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 92 - 288
Target Start/End: Original strand, 22648030 - 22648226
Alignment:
Q  92 agaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagt 191  Q
    ||||||||||| |  |||||||| || ||||| |||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||| |    ||    
T  22648030 agaccaccaatggcaacaattgccagcggtaaacccttgcattttctagaaatttcaaaagatatatcaatgagttcttttggacaacatccattgttgt 22648129  T
Q  192 caaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaata 288  Q
    |||| ||||||| |||||| |||||||| ||||  |||||||| |  ||||||||||| | ||||| ||||||||| || |||||||||||||||||    
T  22648130 caaactgaaatgtcttcttgttgaacaactcaaaagattgttcatttgttaaaggttgcaattcatacacttcaatgaaagaagatttcttacaata 22648226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 22035143 - 22034943
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||| ||||||||||  |||||||||||||| || ||||| |||||| || ||||||||  ||||||| ||||||||||||| |||||| | |||     
T  22035143 gataaaagtccaccaatagcaacaattgctagtggcaaaccctttcactttttaacaatttcattagctataccaatgagctctttgggacaagaccctc 22035044  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttaca 285  Q
    |  |||||||||  |||||||||||||||||||| |  | ||||||||||| |||||||||||| || ||| |||| ||||| || |||||||| |||||    
T  22035043 cgtagtcaaatttgaatgccttcttattgaacaacttcaatgattgttcttgagttaaaggttgcagctcaagcacctcaatgaaagaagattttttaca 22034944  T
Q  286 a 286  Q
    |    
T  22034943 a 22034943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 286
Target Start/End: Original strand, 22615111 - 22615308
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    ||||||||||| || || |  ||||||||||||||||| || ||||| ||| || |||| ||| ||| ||||||||||||||||||||||||||| | ||    
T  22615111 gataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacatt 22615210  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttaca 285  Q
        |||||||||||||||||||||||| ||||| || |  ||||||||||||||||||||||| |  ||||||||||  |  ||||||||| |||||||    
T  22615211 t---gtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgactaacgaagatctcttaca 22615307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 22115711 - 22115511
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||| ||||| || |  ||||||||||| ||||| |||||||| ||| || ||||||||  ||||||| ||||||||||||| |||||| | |||     
T  22115711 gataaaagtccaccgatggcaacaattgctagcggtaaacccttgcattttttaacaatttcattagctataccaatgagctctttgggacaagaccctc 22115612  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttaca 285  Q
    |  |||||||||  |||||||||||||||||||| |  | ||||||||||| |||||||||||| || | | |||| ||||| || |||||||| |||||    
T  22115611 cgtagtcaaatttgaatgccttcttattgaacaacttcaatgattgttcttgagttaaaggttgcagctaaagcacctcaatgaaagaagattttttaca 22115512  T
Q  286 a 286  Q
    |    
T  22115511 a 22115511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 276
Target Start/End: Complemental strand, 22187614 - 22187424
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||| ||||| || |  ||||||||||| ||||| ||  |||| ||| || ||||||||  ||||||| |||||||||| ||||||||||| || |    
T  22187614 gataaaaggccaccgatggcaacaattgctagcggtaaaccactgcattttttaacaatttcatcagctataccaatgagctcgtttggacaacacccat 22187515  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaaga 276  Q
    |  | |||| ||  |||||||||||||||||||| || |  |||||||||  || ||||||||| ||||||||||| |||||||| |||||    
T  22187514 cacaatcaattttgaatgccttcttattgaacaactccaaagattgttctagagataaaggttgcagttcatgcacctcaataaaagaaga 22187424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 21931047 - 21930847
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||| ||||| || |  ||||||||||| ||||| || ||||| ||| || ||||||||  || | || ||||||||||| |||||||||| || |    
T  21931047 gataaaagtccaccgatggcaacaattgctagcggtaaaccattgcattttttaacaatttcattagttgtaccaatgagctctgttggacaacacccat 21930948  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttaca 285  Q
    |  |||||||||  |||||||||||||||||||| || |  |||||||| | |||||||||||| |  ||| ||| |||||| || |||||||| |||||    
T  21930947 catagtcaaatttgaatgccttcttattgaacaactccaaagattgttcatgagttaaaggttgcaactcaagcatttcaatgaaagaagattttttaca 21930848  T
Q  286 a 286  Q
    |    
T  21930847 a 21930847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 30989166 - 30989345
Alignment:
Q  107 acaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgcct 206  Q
    ||||||||||| ||||| || || || ||| || |||||||| |||||||| |||||||||| ||||||||||| ||  |   |||||||   |||||||    
T  30989166 acaattgctagcggtaaaccgttacattttttaacaatttcataagctataccaatgagctcctttggacaacaaccaccatggtcaaatctgaatgcct 30989265  T
Q  207 tcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 286  Q
    ||||||||||||| || |  ||||||| |||| |||||||||| |  ||| ||||||||||| | |||||||| ||||||    
T  30989266 tcttattgaacaactccaaagattgttgttcatttaaaggttgcaactcaagcacttcaatataagaagattttttacaa 30989345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 22357866 - 22358042
Alignment:
Q  107 acaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgcct 206  Q
    ||||||||||||||||| || ||||| ||| || ||||||   ||| ||||||||| || | || |||||||| ||| |  ||||||   || |||||||    
T  22357866 acaattgctagtggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacgtccatttaagtca---tggaatgcct 22357962  T
Q  207 tcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 286  Q
    ||||||||||||| ||||  ||||||||| |||| |||  || |||||||| |||||||| ||| |||||||||||||||    
T  22357963 tcttattgaacaactcaaaagattgttctacagtcaaaccttttagttcatacacttcaacaaaagaagatttcttacaa 22358042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 86 - 276
Target Start/End: Complemental strand, 22028626 - 22028436
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||| ||||| || |  ||||||||||| ||||| ||  |||| ||| || ||||||||  ||||||| |||||||||| ||||||||||| || |    
T  22028626 gataaaaggccaccgatggcaacaattgctagcggtaaaccactgcattttttaacaatttcatcagctataccaatgagctcgtttggacaacacccat 22028527  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaaga 276  Q
    |  | |||| ||  ||||  |||||||||||||| || |  |||||||||  || ||||||||| ||||||||||| |||||||| |||||    
T  22028526 cacaatcaattttgaatgaattcttattgaacaactccaaagattgttctagagataaaggttgcagttcatgcacctcaataaaagaaga 22028436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 21937779 - 21937579
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||| ||||| || |  ||||||||||| ||||| || ||||| ||| |  ||||||||  || |||| || | ||||||||||||||||| || |    
T  21937779 gataaaaggccaccgatggcaacaattgctagcggtaaaccattgcatttttttacaatttcattagatataccatttagctcttttggacaacacccat 21937680  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttaca 285  Q
    |  |||||||||  |||||||||||||||||||| || |  |||||||| | |||||||  ||| |  ||| | |||||||| || |||||||| |||||    
T  21937679 catagtcaaatttgaatgccttcttattgaacaactccaaagattgttcatgagttaaacattgcaactcaagaacttcaatgaaagaagattttttaca 21937580  T
Q  286 a 286  Q
    |    
T  21937579 a 21937579  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 283
Target Start/End: Original strand, 22436477 - 22436671
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    ||||||||||||||| |    ||||||||||| ||||| || ||||| ||| || ||||||   ||| ||||||||| || | || ||||||||||||      
T  22436477 gataaaagaccaccagtgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttgtggacaacatccac 22436576  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttctta 283  Q
     ||||| |   || |||||||||||||||||||| || |  |||| |||||||||||||  ||| |||||||| ||||||| ||| |||||| |||||    
T  22436577 tcaagtta---tggaatgccttcttattgaacaattctaaagatttttcttcagttaaaccttgaagttcatgtacttcaacaaaagaagatctctta 22436671  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 22105334 - 22105205
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||| ||||| || |  ||||||||||| ||||| || ||||| ||| || |||| |||  ||||||| |||||||||||||||||||||| || |    
T  22105334 gataaaaggccacctatggcaacaattgctagcggtaaaccattgcattttttaacaatgtcattagctataccaatgagctcttttggacaacacccat 22105235  T
Q  186 ccaagtcaaattgaaatgccttcttattga 215  Q
    |  | |||||||  ||| ||||||||||||    
T  22105234 cacaatcaaatttgaataccttcttattga 22105205  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 22180043 - 22179910
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgcactttctagcaatttcaaaagctatatcaatgagctcttttggacaacatcctt 185  Q
    |||||||| ||||| || |  ||||||||||| ||||| || ||||| ||| || ||||||||  ||||||| |||||| ||||||| || |||| || |    
T  22180043 gataaaagtccaccgatggcaacaattgctagcggtaaaccattgcattttttaacaatttcattagctataccaatgacctctttttgaaaacacccgt 22179944  T
Q  186 ccaagtcaaattgaaatgccttcttattgaacaa 219  Q
    |   ||||||||  ||||||||||||||||||||    
T  22179943 cattgtcaaatttgaatgccttcttattgaacaa 22179910  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 22431133 - 22431213
Alignment:
Q  206 ttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 286  Q
    |||||||||||||| || |  |||| |||||| ||||||  ||  |||||||||||||||| ||| |||||||||||||||    
T  22431133 ttcttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaacaaaagaagatttcttacaa 22431213  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 22657294 - 22657250
Alignment:
Q  48 atcactgaaatggatcgaggtgcattgatttctgagttgataaaa 92  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||    
T  22657294 atcactgaaatggatcgaggcgcattgatttctgagctgagaaaa 22657250  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 21946195 - 21946092
Alignment:
Q  141 caatttcaaaagctatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagt 240  Q
    ||||||||  ||||||| |||| ||||| |||||| |||| ||  |  ||||||||| ||||||||||||||| ||||| || |  |||||||||| |||    
T  21946195 caatttcattagctataccaattagctcatttggataacacccaccatagtcaaatttaaatgccttcttattaaacaactccaaagattgttcttgagt 21946096  T
Q  241 taaa 244  Q
    ||||    
T  21946095 taaa 21946092  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 22367884 - 22367967
Alignment:
Q  203 gccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 286  Q
    ||||||||||||||||| || |  |||| ||||||| |||||  ||  |||| ||||||||||| ||| |||||||||||||||    
T  22367884 gccttcttattgaacaattctaaagatttttcttcacttaaaccttcaagtttatgcacttcaacaaaagaagatttcttacaa 22367967  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 3220945 - 3220985
Alignment:
Q  83 gttgataaaagaccaccaatagtcacaattgctagtggtaa 123  Q
    |||||||||||||||||||| | ||||||||| ||||||||    
T  3220945 gttgataaaagaccaccaatggccacaattgccagtggtaa 3220985  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 18966946 - 18966990
Alignment:
Q  205 cttcttattgaacaaatcaattgattgttcttcagttaaaggttg 249  Q
    ||||||||||||||| || || ||||||||||| |||||||||||    
T  18966946 cttcttattgaacaactctatagattgttcttcggttaaaggttg 18966990  T

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Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 188 - 290
Target Start/End: Complemental strand, 40580512 - 40580410
Alignment:
Q  188 aagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaat 287  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  40580512 aagtcaaattgaaatgccttcttgttgaacaaatcaaatgatttttcttctgttaaaggttgtagttcatgcacttcaataaaagaaaatttcttacaat 40580413  T
Q  288 aca 290  Q
    |||    
T  40580412 aca 40580410  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 40580559 - 40580513
Alignment:
Q  86 gataaaagaccaccaatagtcacaattgctagtggtaagcccttgca 132  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  40580559 gataaaagaccaccaatagtaacaattgctagtggtaagcccttgca 40580513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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