View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_2D_low_53 (Length: 288)
Name: NF2853_2D_low_53
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 43917302 - 43917040
Alignment:
| Q |
6 |
agagatatgacaaatgttcgagttctgtttagtcaacatttggatgacaatgtcctcaagcagcaacagaaggtaaattattgcttttatgcttatgatt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43917302 |
agagatatgacaaatgttcgagttctgtttagtcaacatttggatgacaatgtcctcaagcagcaacagaaggtaaattattgcttttatgcttatgatt |
43917203 |
T |
|
| Q |
106 |
ggagatgctaaatgttgtgattatcaactaatgatgttgttttatcctccttgcagatcttggcgcgtcttaatatatctactgcatcaagctcattgga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43917202 |
ggagatgctaaatgttgtgattatcaactagtgatgttgttttatcctccttgcagatcttggcgcgtcttaatatatctactgcatcaagctcaatgga |
43917103 |
T |
|
| Q |
206 |
agccactcatttcatagcagacaagtttacacgtacaaagaatatgctggaagcaatggctct |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43917102 |
agccactcatttcatagcagacaagtttacacgtacaaagaatatgctggaagcaatggctct |
43917040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 53104595 - 53104325
Alignment:
| Q |
6 |
agagatatgacaaatgttcgagttctgtttagtcaacatttggatgacaatgtcctcaagcagcaacagaaggtaaattattgcttttatgcttatgatt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53104595 |
agagatatgacaaatgttcgagttctgtttagtcaacagttggatggcaatgtcctcaagcaacaacagaaggtaaattattgcttttatgtttatgata |
53104496 |
T |
|
| Q |
106 |
ggag--------atgctaaatgttgtgattatcaactaatgatgttgttttatcctccttgcagatcttggcgcgtcttaatatatctactgcatcaagc |
197 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53104495 |
ggagtctaggagatgctaaatgttgtgattatcgactagtgatgttgttctatcctccttgcagatcttggcgcgtcttaatatatctactgcatcaaac |
53104396 |
T |
|
| Q |
198 |
tcattggaagccactcatttcatagcagacaagtttacacgtacaaagaatatgctggaagcaatggctct |
268 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53104395 |
tcagtggaagccactcatttcataacagacaagtttacacatacaaagaatatgctggaagcaatggctct |
53104325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University