View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_54 (Length: 287)
Name: NF2853_2D_low_54
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 41132872 - 41132603
Alignment:
| Q |
1 |
tactttcactaaagggattaaaaacaacgatgacattcttggagtattgtctctcataatctacactattgtgcttatccccatgctcaaatatgttttc |
100 |
Q |
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| T |
41132872 |
tactttcgctaaagggattaaaaacaacgatgacattcttggagtattgtctctcataatctacactattgtgcttatccccatgctcaaatatgttttc |
41132773 |
T |
|
| Q |
101 |
attgtcttatgggctaatgacaatggcaatggtacgtaaaaattatatatttgactctttttctggattgtctaagtgtataatatttaaagtgtatttc |
200 |
Q |
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| T |
41132772 |
atcgtcttatgggctaatgacaatggcaatggtacgtaaaaattatatatttgactctttttctggattgtctaagtgtctaatatttaaagtgtatttc |
41132673 |
T |
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| Q |
201 |
ataaaagttgcttaatttttctatcattgaagtaaaatatgtttgagttgtattagtataagtatgattt |
270 |
Q |
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| T |
41132672 |
ataaaagttgcttaatttttctatcattgaagtaaaatatgtttgagttgtattagtataagtatgattt |
41132603 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 2875287 - 2875235
Alignment:
| Q |
196 |
atttcataaaagttgcttaatttttctatcattgaagtaaaatatgtttgagt |
248 |
Q |
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| T |
2875287 |
attttataaaagttgcttaattattttatcattgaagaaaaatatgcttgagt |
2875235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 20834636 - 20834584
Alignment:
| Q |
197 |
tttcataaaagttgcttaatttttctatcattgaagtaaaatatgtttgagtt |
249 |
Q |
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| T |
20834636 |
tttcataaaagttgtttaaatgttctattattggaataaaatatgtttgagtt |
20834584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 33780318 - 33780274
Alignment:
| Q |
202 |
taaaagttgcttaatttttctatcattgaagtaaaatatgtttga |
246 |
Q |
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||||||||| |||||||||||||| || |||||||||||| |||| |
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| T |
33780318 |
taaaagttgattaatttttctatcgttaaagtaaaatatgcttga |
33780274 |
T |
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