View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_2D_low_56 (Length: 255)

Name: NF2853_2D_low_56
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_2D_low_56
NF2853_2D_low_56
[»] chr1 (5 HSPs)
chr1 (45-255)||(34989452-34989662)
chr1 (53-255)||(2305506-2305708)
chr1 (45-200)||(34975617-34975772)
chr1 (48-199)||(34980400-34980551)
chr1 (19-51)||(34989910-34989942)
[»] chr3 (13 HSPs)
chr3 (48-255)||(22657087-22657294)
chr3 (52-255)||(22620935-22621138)
chr3 (148-250)||(22648210-22648312)
chr3 (93-253)||(22615291-22615451)
chr3 (55-250)||(21930666-21930861)
chr3 (93-250)||(22115368-22115525)
chr3 (120-225)||(22431224-22431329)
chr3 (146-205)||(30989376-30989435)
chr3 (120-229)||(22367974-22368083)
chr3 (120-229)||(22630485-22630594)
chr3 (146-250)||(22034853-22034957)
chr3 (93-229)||(22458536-22458672)
chr3 (93-229)||(22481517-22481653)
[»] scaffold1439 (2 HSPs)
scaffold1439 (105-199)||(1714-1808)
scaffold1439 (183-255)||(1614-1686)
[»] chr5 (2 HSPs)
chr5 (126-209)||(40580244-40580327)
chr5 (155-255)||(40580333-40580433)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 34989452 - 34989662
Alignment:
Q  45 ggaatcactgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34989452 ggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaa 34989551  T
Q  145 gtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaa 244  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34989552 gtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagatatttattaccacaagaaataaggatgttgccatgtattgtaagaa 34989651  T
Q  245 atcttcgttta 255  Q
    |||||| ||||    
T  34989652 atcttcattta 34989662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 2305708 - 2305506
Alignment:
Q  53 tgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgg 152  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  2305708 tgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttttgtgtttgataatgtatggaacacaagtttttgg 2305609  T
Q  153 gatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgt 252  Q
    |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |    
T  2305608 gatgagattgaatatgctatgagtgatcataaaaatggtagtaagatatttattaccacaagaaatatggatgttgccatatattgtaagaaatcttctt 2305509  T
Q  253 tta 255  Q
    |||    
T  2305508 tta 2305506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 34975617 - 34975772
Alignment:
Q  45 ggaatcactgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34975617 ggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaa 34975716  T
Q  145 gtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagata 200  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  34975717 gtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagata 34975772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 34980400 - 34980551
Alignment:
Q  48 atcactgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtt 147  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34980400 atcactgaaatggatcgagatgcattgatttatgagttgagaaattacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtt 34980499  T
Q  148 tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagat 199  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  34980500 tttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat 34980551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 34989942 - 34989910
Alignment:
Q  19 aaaatcttttttattctggtcaaatgggaatca 51  Q
    |||||||||||||||||||||||||||||||||    
T  34989942 aaaatcttttttattctggtcaaatgggaatca 34989910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 48 - 255
Target Start/End: Complemental strand, 22657294 - 22657087
Alignment:
Q  48 atcactgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtt 147  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  22657294 atcactgaaatggatcgaggcgcattgatttctgagctgagaaaatacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacaaaagtt 22657195  T
Q  148 tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatc 247  Q
    ||||||||||||||||||||| |||  ||||| |||||||||| ||||||||||||||||| | |||||||| |||||||||  ||||||||||||||||    
T  22657194 tttgggatgagattgaatatgctgttggtgatcataaaaatgggagtaagatatttattacaacaagaaatatggatgttgcggtgtattgtaagaaatc 22657095  T
Q  248 ttcgttta 255  Q
    ||| ||||    
T  22657094 ttctttta 22657087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 52 - 255
Target Start/End: Complemental strand, 22621138 - 22620935
Alignment:
Q  52 ctgaaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttg 151  Q
    |||||||||||| |||  ||||||||||| |||||| |||  |||||||  ||||||||||| ||||||| |||||||||||||||| || |  ||||||    
T  22621138 ctgaaatggatctagggtcattgatttctaagttgagaaaccacttgcaacaaaagaggtatgtttttgtatttgatgatgtatggaccatagatttttg 22621039  T
Q  152 ggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcg 251  Q
    | |||| || ||  ||| ||||| |||| |||||||||| ||||||||||| ||||| | ||||| || ||||||||| || |||||||| ||||||||     
T  22621038 gaatgaaatagagcatgttgtgattgataataaaaatgggagtaagatattgattacaacaagaagtatggatgttgctatttattgtaaaaaatcttct 22620939  T
Q  252 ttta 255  Q
    ||||    
T  22620938 ttta 22620935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 22648312 - 22648210
Alignment:
Q  148 tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatc 247  Q
    ||||||||||||||||| |||   ||| |||| |||||||||| ||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||    
T  22648312 tttgggatgagattgaaaatgcattgattgataataaaaatgggagtaagatatttattacaacaagaaatatggatgttgccatatattgtaagaaatc 22648213  T
Q  248 ttc 250  Q
    |||    
T  22648212 ttc 22648210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 93 - 253
Target Start/End: Complemental strand, 22615451 - 22615291
Alignment:
Q  93 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 192  Q
    ||||||||| ||||||||||  || ||||||||||||||||||||||||    ||||||| |||||||||||| || ||| | |||| |||||||||| |    
T  22615451 tacttgcagcaaaagaggtacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaa 22615352  T
Q  193 gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtt 253  Q
    ||||||||||||| || | ||| ||||  ||||||||  | | |||||||| |||||||||    
T  22615351 gtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagatcttcgtt 22615291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 250
Target Start/End: Original strand, 21930666 - 21930861
Alignment:
Q  55 aaatggatcgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttggga 154  Q
    |||||||||||||  |||||| | ||||  ||| ||| | ||||||||||||||||||| || | |||||||||||||| |||||   |  |||||||||    
T  21930666 aaatggatcgaggatcattgactgctgaagtgagaaaatgcttgcagaaaaagaggtatgttgtcgtgtttgatgatgtttggaatgtacatttttggga 21930765  T
Q  155 tgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttc 250  Q
    ||| ||||||| || ||  | ||||  ||||||||| |||||||||||||| || | ||| || | ||||||||   ||| |||||| ||||||||    
T  21930766 tgatattgaatttgctgcaattgatagtaaaaatggaagtaagatatttataacaacaaggaacatggatgttgtggtgtcttgtaaaaaatcttc 21930861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 22115368 - 22115525
Alignment:
Q  93 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 192  Q
    ||||||||||||||||||||  || | |||||||||||||| |||||   |  |||||||||||| ||||||| |  ||| | ||||  ||||||||| |    
T  22115368 tacttgcagaaaaagaggtacgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattgatagtaaaaatggaa 22115467  T
Q  193 gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttc 250  Q
    ||||||||||||| || | |||||| | ||||||||   ||| |||||| ||||||||    
T  22115468 gtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaatcttc 22115525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 22431329 - 22431224
Alignment:
Q  120 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 219  Q
    |||||||||||||||||| |  ||| ||||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| |    
T  22431329 gtgtttgatgatgtatgggagtcaaatttttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca 22431230  T
Q  220 aggatg 225  Q
    ||||||    
T  22431229 aggatg 22431224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 30989435 - 30989376
Alignment:
Q  146 tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttat 205  Q
    |||||||||||| ||||||| || ||| | |||| |||||||||| ||||||||||||||    
T  30989435 tttttgggatgatattgaatttgctgtaattgataataaaaatggaagtaagatatttat 30989376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 22368083 - 22367974
Alignment:
Q  120 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 219  Q
    |||||||||||||||||| || ||  ||||||| |||| ||||||| |  | ||| |||| | ||||||||| |||||||||| || || | ||||||      
T  22368083 gtgtttgatgatgtatgggactcacatttttggaatgatattgaattttctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaacg 22367984  T
Q  220 aggatgttgc 229  Q
    ||||||||||    
T  22367983 aggatgttgc 22367974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 22630594 - 22630485
Alignment:
Q  120 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 219  Q
    |||||||||||||||||| |  ||   |||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| |    
T  22630594 gtgtttgatgatgtatgggaggcacaattttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca 22630495  T
Q  220 aggatgttgc 229  Q
    ||||||||||    
T  22630494 aggatgttgc 22630485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 22034853 - 22034957
Alignment:
Q  146 tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaa 245  Q
    |||||||||||| ||||||| |  ||| | ||||  ||||||||| |||||||||||||| || | |||||| | ||||||||   ||| |||||| |||    
T  22034853 tttttgggatgatattgaattttctgtaattgatagtaaaaatggaagtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaa 22034952  T
Q  246 tcttc 250  Q
    |||||    
T  22034953 tcttc 22034957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 22458672 - 22458536
Alignment:
Q  93 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 192  Q
    ||||||||| |||| |||||| || | || |||||||||||||||| |  |  |||||||||||| ||  ||| || | ||| |||| ||||||| |||     
T  22458672 tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt 22458573  T
Q  193 gtaagatatttattaccagaagaaataaggatgttgc 229  Q
    |||||||||| || || | |||||| | |||||||||    
T  22458572 gtaagatattaatcacaacaagaaacatggatgttgc 22458536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 22481653 - 22481517
Alignment:
Q  93 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 192  Q
    ||||||||| |||| |||||| || | || |||||||||||||||| |  |  |||||||||||| ||  ||| || | ||| |||| ||||||| |||     
T  22481653 tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt 22481554  T
Q  193 gtaagatatttattaccagaagaaataaggatgttgc 229  Q
    |||||||||| || || | |||||| | |||||||||    
T  22481553 gtaagatattaatcacaacaagaaacatggatgttgc 22481517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1439 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 1808 - 1714
Alignment:
Q  105 aagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagat 199  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  1808 aagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat 1714  T

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Target: scaffold1439; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 1686 - 1614
Alignment:
Q  183 aaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgttta 255  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||  ||||||||||||||||||| ||||    
T  1686 aaaaatggtagtaagatatttattaccacaagaaatatggatgttgctgtgtattgtaagaaatcttctttta 1614  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 40580244 - 40580327
Alignment:
Q  126 gatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattacc 209  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  40580244 gatgatgtatggaacaaaagtttttggggtgatattgaatatgctatgagtgataataaaaatggtagtaagatatttattacc 40580327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 40580333 - 40580433
Alignment:
Q  155 tgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgttt 254  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||  ||||| || |||||||||  ||||||||||||||| ||| |||    
T  40580333 tgagattgaatatgctatgagtgataataaaaatggtagtaagatatttattacctcaagaagtatggatgttgcagtgtattgtaagaaattttctttt 40580432  T
Q  255 a 255  Q
    |    
T  40580433 a 40580433  T

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