View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_2D_low_6 (Length: 591)
Name: NF2853_2D_low_6
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_6 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 34055181 - 34054612
Alignment:
| Q |
1 |
agggtggtcaactgactgaggcagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34055181 |
agggtggtcaactgactgaggaagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgct |
34055082 |
T |
|
| Q |
101 |
tcaaatcctgggagatgggaggttaacagacagtaagggaagaactgttgacttcaagaacacttcttataatgacatcaaatgttggaagcagtgtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34055081 |
tcaaatcctgggagatgggaggttaacagacagtaagggaagaactgttgacttcaagaacacttcttataatgacatcaaatgttggaagcagtgtgat |
34054982 |
T |
|
| Q |
201 |
tgtgaaaggaggctgtcggacaacagttatagccaaatcaaaagcttggcgaccgaggagtgaagcaatactttaggccagagttcttgaataggctgga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34054981 |
tgtgaaaggaggctgtcggacaacagttataaccaaatcaaaagcttggcgaccgaggagtgaagcaatactttaggccagagttcttgaataggctgga |
34054882 |
T |
|
| Q |
301 |
tgaaattattttgaggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagc |
400 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34054881 |
tgaaatta--tcgaggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcgagagattgagc |
34054784 |
T |
|
| Q |
401 |
tttcggtgacagagagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggaga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34054783 |
tttcggtgacagagagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaagattgagctctctgtgacagggaga |
34054684 |
T |
|
| Q |
501 |
ttaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtg |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34054683 |
ttaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtg |
34054612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 40245493 - 40245712
Alignment:
| Q |
1 |
agggtggtcaactgactgaggcagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40245493 |
agggtggtcaactgactgaggcagttcggcgtcgtccctacacggttgtactctttgatgagattgagaaagcccatcctgatgtcttcaacatgatgct |
40245592 |
T |
|
| Q |
101 |
tcaaatcctgggagatgggaggttaacagacagtaagggaagaactgttgacttcaaga--acacttcttataatgacatcaaatgttggaagcagtgtg |
198 |
Q |
| |
|
||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40245593 |
tcaaatcctggaagatgggaggctaacagatagtaagggaagaactgtggacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtg |
40245692 |
T |
|
| Q |
199 |
attgtgaaaggaggctgtcg |
218 |
Q |
| |
|
|| | |||||||||| |||| |
|
|
| T |
40245693 |
atcgagaaaggaggccgtcg |
40245712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 218 - 477
Target Start/End: Original strand, 40245743 - 40246007
Alignment:
| Q |
218 |
ggacaacagttatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaaattatt---ttg |
313 |
Q |
| |
|
||||| |||||||| | |||||| ||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||| ||| || |
|
|
| T |
40245743 |
ggacagcagttataacagaatcaagagcttggtgaccgaagagctgaaacaatactttaggccagagttcttgaataggcttgatgaaatgattgttttc |
40245842 |
T |
|
| Q |
314 |
aggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacag |
412 |
Q |
| |
|
|||||||| || ||||||| |||||| |||||| ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || ||||||| |
|
|
| T |
40245843 |
aggcaactcactaaactggaggttaaggagatagcagatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacag |
40245942 |
T |
|
| Q |
413 |
agagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
477 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
40245943 |
agagatttagggagagagtggtcgacgaaggttataatcctagttatggggccaggcctctaaga |
40246007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 494 - 569
Target Start/End: Original strand, 40246059 - 40246134
Alignment:
| Q |
494 |
agggagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagta |
569 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||| |
|
|
| T |
40246059 |
agggagattaaagagggcgactctgttatagtggatgctgattctgatggaaacgtgattgtactcaacggtagta |
40246134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 5e-82; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 47382779 - 47382992
Alignment:
| Q |
1 |
agggtggtcaactgactgaggcagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgct |
100 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
47382779 |
agggtggtcaattgactgaggcagttcggcgccgtccctatactgttgtactctttgatgagattgagaaagcccatcctgatgtcttcaatatgatgct |
47382878 |
T |
|
| Q |
101 |
tcaaatcctgggagatgggaggttaacagacagtaagggaagaactgttgacttcaaga--acacttcttataatgacatcaaatgttggaagcagtgtg |
198 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47382879 |
tcaaattctggaagatgggaggctaacagatagtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgtg |
47382978 |
T |
|
| Q |
199 |
attgtgaaaggagg |
212 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
47382979 |
attgagaaaggagg |
47382992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 218 - 477
Target Start/End: Original strand, 47383029 - 47383293
Alignment:
| Q |
218 |
ggacaacagttatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaaattatt---ttg |
313 |
Q |
| |
|
||||| |||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
47383029 |
ggacagcagttataaccgaatcaaaagcttggtgaccgaggagctgaagcaatactttaggccagagttcttgaataggctggatgaaatgattgttttc |
47383128 |
T |
|
| Q |
314 |
aggcaacttacataactggatgttaagtagatagtttgtataatgctgaaggaagtgtcagagaaactgaaagtcga-gagattgagctttcggtgacag |
412 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||||| | ||||||||||||||| |||| |||| ||||||| | | ||||||||||| || ||||||| |
|
|
| T |
47383129 |
aggcaacttacaaaactggaggttaaggagatagctgatataatgctgaaggaggtgttcgagagactgaaaaccaaagagattgagctctcagtgacag |
47383228 |
T |
|
| Q |
413 |
agagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
477 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
47383229 |
agagatttagggagagagtggtcgacgaaggttataatcctagttatggtgccagacctctaaga |
47383293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 113 - 477
Target Start/End: Original strand, 47817986 - 47818366
Alignment:
| Q |
113 |
agatgggaggttaacagacagtaagggaagaactgttgacttcaagaacac--ttcttataatgacatcaaatgttggaagcagtg-tgattgtgaa-ag |
208 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| | |
|
|
| T |
47817986 |
agatgggaggctaactgatagtaagggaagaactgtcgacttcaagaacacacttcttataatgacatcaaatgttggaagcagtgctgaccttgactat |
47818085 |
T |
|
| Q |
209 |
gaggctgtcggacaacagttatagccaaatcaaaagcttggcgaccgaggag-tgaagcaatactttaggccagagttcttgaataggctggatgaa--- |
304 |
Q |
| |
|
|| | | |||||||||||||| || |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47818086 |
gatga-gaaggacaacagttataaccgaatcaaaagcttggtgatcgaggagctgaagcaatactttaggccagagttcttgaataggctggatgaaatg |
47818184 |
T |
|
| Q |
305 |
attattttgaggcaacttacataactggatgtta-------agtagatagtttgtataa-tgctgaaggaagtgtcagagaaactgaaagtc-gagagat |
395 |
Q |
| |
|
||| |||| |||||||||||| ||||||| | || || |||||| | ||||| |||| ||||| |||| |||| ||||||| | |||||| |
|
|
| T |
47818185 |
attgttttcaggcaacttacaaaactggaggctaaggagttaggagatagctgatataattgcttaaggaggtgttcgagagactgaaaaccaaagagat |
47818284 |
T |
|
| Q |
396 |
tgagctttcggtgacagagagatttaggaagagagttgtcgacaaaggttatgatcctagttatggtcccagacctctaaga |
477 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||||| |||||||| |||||| ||||||| |||||||||||||| |
|
|
| T |
47818285 |
tgagctttcagtgacagagagatttagggagagagtggtcgatgaaggttataatcctaattatggtgccagacctctaaga |
47818366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 45115730 - 45115942
Alignment:
| Q |
3 |
ggtggtcaactgactgaggcagtttggcgccgtccctacactgttgtaccctttgatgagattgagaaagcccatcatgatgtcttcaacatgatgcttc |
102 |
Q |
| |
|
|||||||| ||||||| |||||| | || ||||| ||||||||||||| |||||||||||| |||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
45115730 |
ggtggtcagttgactgaagcagttcgtcgtcgtccttacactgttgtactctttgatgagatcgagaaagctcatcctgatgtattcaacatgatgcttc |
45115829 |
T |
|
| Q |
103 |
aaatcctgggagatgggaggttaacagacagtaagggaagaactgttgacttcaaga--acacttcttataatgacatcaaatgttggaagcagtgtgat |
200 |
Q |
| |
|
| ||||| | |||||| || |||| |||||||| || ||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45115830 |
agatccttgaagatggaagactaacggacagtaaaggccgaactgtggatttcaagaacacacttcttataatgacgtcaaatgttggaagcagtgtgat |
45115929 |
T |
|
| Q |
201 |
tgtgaaaggaggc |
213 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
45115930 |
tgagaaaggaggc |
45115942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 497 - 572
Target Start/End: Original strand, 47383348 - 47383423
Alignment:
| Q |
497 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtg |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
47383348 |
gagattaaagagggtgactctgttatagtggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtg |
47383423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 497 - 572
Target Start/End: Original strand, 47818421 - 47818494
Alignment:
| Q |
497 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtg |
572 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47818421 |
gagattaaagagggcgactct--tatagtggatgctgattctgatggaaatgtgattgtgctcaatggtagtagtg |
47818494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 566
Target Start/End: Original strand, 45116297 - 45116366
Alignment:
| Q |
497 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggta |
566 |
Q |
| |
|
||||| |||||||||||||| || |||||||||| |||||| || || ||||| ||||| |||||||||| |
|
|
| T |
45116297 |
gagatcaaagagggtgactccgtaatagtggatgttgattccgagggtaatgtgattgttctcaatggta |
45116366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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