View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_63 (Length: 229)
Name: NF2853_2D_low_63
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 49923071 - 49923281
Alignment:
| Q |
1 |
tctcattcccgctctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatt |
100 |
Q |
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| T |
49923071 |
tctcattcccgttctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatt |
49923170 |
T |
|
| Q |
101 |
tcacttctttttgcattttacgaatctgggtcaggttgttttactcgtggga-ttttttacttacttggccattgttggatccattctccctgaaaaact |
199 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49923171 |
tcatttctttttgcattttacgaatctgggtcaggttgttttactcgtgggatttttttacttacttggccattgttggatccattctccctggaaaact |
49923270 |
T |
|
| Q |
200 |
tgttcctggtg |
210 |
Q |
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||||||||||| |
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| T |
49923271 |
tgttcctggtg |
49923281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 26778003 - 26777794
Alignment:
| Q |
1 |
tctcattcccgctctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatt |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||| |||||| ||||||||| |
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| T |
26778003 |
tctcattcacgctctaattccatcatggaactccgttagttcaaactactcacaacccattactttaattcaatcatttattccaattctgtcatcaatt |
26777904 |
T |
|
| Q |
101 |
tcacttctttttgcattttacgaatctgggtcaggttgttttactcgtgggattttttacttacttggccattgttggatccattctccctgaaaaactt |
200 |
Q |
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||| |||||||||||||| |||||||||||||||||| |||||| | ||| |||||||||||||| ||||||||||||||||||||||||| ||| ||| |
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| T |
26777903 |
tcatatctttttgcatttttcgaatctgggtcaggttgctttacttgcgggtttttttacttacttagccattgttggatccattctccctggaaagctt |
26777804 |
T |
|
| Q |
201 |
gttcctggtg |
210 |
Q |
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|||||||||| |
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| T |
26777803 |
gttcctggtg |
26777794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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